HsaINT0069700 @ hg19
Intron Retention
Gene
ENSG00000130309 | GLT25D1
Description
glycosyltransferase 25 domain containing 1 [Source:HGNC Symbol;Acc:26182]
Coordinates
chr19:17690291-17691714:+
Coord C1 exon
chr19:17690291-17690418
Coord A exon
chr19:17690419-17691507
Coord C2 exon
chr19:17691508-17691714
Length
1089 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
GGCCCGATCTTGCACCCCAGCTA
3' ss Score
4.13
Exon sequences
Seq C1 exon
GTGGTGGACCGGGGGCTGCAGAAATCGCTTGTGTTTGAGGATGACCTGCGTTTTGAGATCTTCTTCAAGAGACGTCTGATGAACCTCATGCGGGATGTGGAGCGGGAGGGCCTGGACTGGGACCTCAT
Seq A exon
GTGAGTGGGGGTCTGAGGATGGGGTGAAGCTGGGGCCTGGGGCAAGGCCAGGACTTAGAGGTGGGGGTGGGGGCAGGGTGGAGCTGGGACCTGGGGATGGGTCATGGCTTAGAGGCGGGGCTTGAAGGTGGGGTGGAACTGGAGCCTAGGTACATGGCCAGGGCTTAGAGGTGGGGCTGGGAGGCGGAGTGGAGCTGAATCCTACGGGCGTGGCCACAGCGCTGCAGCTGAGCCTAGAGCCTGTATGTCTGGGTGTGGTCAGGGTGGCAGGCGTGGCCAACCCTTGGAAGCGTAGCAGGAGGGCTCACGTGGTTCCTGGGCCTGAAGGCACTGTCAGGGCTGTAGCCTATAGGGAAGGGCGTTGGAAGGATCACCCAGAACTCAAGGGACCTGGCCGGAAGCCTGCAGGCTTGGTCAAGGCTTAGAGACTTGACTGAGGCCTGTGGAGGTGGATGTGGCTAAAATTTGACCGGGCAGCCTGTGGGCGTGGCTGAAGAGCATGGGGGTGTGGTCAGAGCTGGAGGTGTGGCCGAAGAGTGTGGGGGCGTGGCCAGGGCGCCTGGTCTTAGACAAGCCCCTGGATGGGAGTGCCACCAACATGTTTCCAGCACTGGAGCCGTCCTTCTCTTCTGTAAGTGGGCTGGTTTGTCCTCTCCCTTCCTCCATCTCTTTTTTCCCTTCCATGTGCAGTGCCCTAATCTGCATTCTGGGAACACTGCCCCATGTGAATAGTAACTGCACCCCTCCATTCCTGACTGCCCCCCCATCAGGGCACCTCGCCCACCTCCACCCCCACTGTCCTCTGAACTCAGAGCAGCTTCAGCCTCAGAGAACGTCTGCGTGATCCTGCTCTCCCCAGCTCCAGATCCTCCATGGCTCCCTCACGCCCTTTGGAAAAACTCACTCTTCTCCCCCATGACCGCCAGACCCCTGGGCTCCTGCATTCACTCCATCCAGTCACAGAGCTCTGCAAACATGCTGAGCCTGCTCCCATCCCAGGACCTGACGGGGTAACTAGATCCCTGGCTTTCTGGGCAAGCTCCCTCCGGAGGGCGGGAGGAGAGTGACAGGCCCGATCTTGCACCCCAG
Seq C2 exon
CTATGTGGGCCGGAAGCGGATGCAGGTGGAGCACCCCGAGAAGGCTGTGCCTCGCGTGAGGAACCTGGTGGAGGCCGACTATTCCTACTGGACCCTGGCCTACGTGATCTCCCTGCAAGGCGCCCGCAAACTGCTGGCTGCTGAGCCGCTCTCCAAGATGCTGCCTGTGGACGAGTTCCTGCCCGTCATGTTCGACAAACACCCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130309-GLT25D1:NM_024656:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.007
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(22.6=100)
A:
NA
C2:
PF0175512=Glyco_transf_25=PD(32.3=85.7)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGGGGCTGCAGAAATC
R:
ACTGGGTGTTTGTCGAACA
Band lengths:
327-1416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)