HsaINT0069701 @ hg19
Intron Retention
Gene
ENSG00000130309 | GLT25D1
Description
glycosyltransferase 25 domain containing 1 [Source:HGNC Symbol;Acc:26182]
Coordinates
chr19:17691508-17693965:+
Coord C1 exon
chr19:17691508-17691714
Coord A exon
chr19:17691715-17691985
Coord C2 exon
chr19:17691986-17693965
Length
271 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGA
5' ss Score
1.71
3' ss Seq
TCCCCTCCTCCTCCCCCCAGGTC
3' ss Score
14.34
Exon sequences
Seq C1 exon
CTATGTGGGCCGGAAGCGGATGCAGGTGGAGCACCCCGAGAAGGCTGTGCCTCGCGTGAGGAACCTGGTGGAGGCCGACTATTCCTACTGGACCCTGGCCTACGTGATCTCCCTGCAAGGCGCCCGCAAACTGCTGGCTGCTGAGCCGCTCTCCAAGATGCTGCCTGTGGACGAGTTCCTGCCCGTCATGTTCGACAAACACCCAGT
Seq A exon
GTGAGAGGGGCAGGCGGCTGCTGGGCTGGGGTTTCACGGTGGGTCTGTCCTGGGAGAATGGGGATGTGAGACTCACGGCCTCCGAGAAGATGTCTCTTCTTTTGCCTACTTCTCCCTCCGTTTGCCCCCTCGCAGATCTGTCTCCATTTGTATCCCCTGCACACTTACGTTTTAATCTGTCCCCGCTGACTTCTTCACCCCCAATTTTTCCTCCAGCTGTCCCGTCCCCTGAAGCCATTGCTGCCCCTCACTCCCCTCCTCCTCCCCCCAG
Seq C2 exon
GTCCGAGTACAAGGCCCACTTCTCCCTCCGCAACCTGCATGCCTTCTCTGTGGAGCCGCTGCTCATCTACCCCACACACTACACAGGAGACGATGGCTATGTGAGTGACACCGAGACCTCAGTCGTATGGAACAATGAGCACGTCAAGACCGACTGGGACCGCGCCAAGTCCCAGAAGATGCGGGAGCAGCAGGCACTGAGCCGTGAGGCCAAGAACTCGGACGTGCTCCAGTCCCCACTGGACAGTGCTGCCCGGGATGAACTCTGAGGGGTAGCAGCCAGAAAGCCAAAGCAGCCATCGGTGGCCCAGGCTCCACGTGCTTACTGAGGACATCAGGTCCACCTCTGGACCCCTTGGCAGGCCACAGAGGGCTCTCGTGTGGGGTGGTGTCCAGCCAGCTCTTGCTAAGCAATCACGTGCACACAGGCAGCATTAATGGAGTGCCTACTGCATGCCAGCAACAGGGCTTGGCCCTGGGGAATTGGGAGGAACCAAGCCCTCTTCATCTGTTCATGTGCCCAGCATTTATTAAGCACCTGCTGTATGCAAGGTTCCCATGTTACGGCAGTGAATGAGGCATAATTGTTCCCTCCATCAGCGATTGATTCAGTCATCAAGCAGTTACTGATCAGATTAAGAATCAGGCACTAGTGATACACATTCATTTTTAAAATTCATTCAAGGATTTATTGAGTGCCTACTGTGTGTTGGGTGCCATTCCAGGCTCTGGGATTTTTTTTTTTTTTTTTTTAAGAGTAGAGTCTGTCTCTGTCACCCAGGCTGGAGTGCAGTGGTGTGACGGCTCACTGCAGCCTGCGCCTCCCAGCGTCCAGCAATTCTTGTTTCTCGGCCTCCCAAGTAGCTGGGACTATAGGTGCGTGCCATCACATCTGGCTAGTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCCGCCTTGGCCACCCAAAGTGCTAGGGTTACAGGCATGAGCCACTGTGCCCAGCCCAGGCTCTGGGAATATTGAGATAAATAAGATGCTTCTATCCATTTATTCAAGCACATATTGGTCACCTACTGTGTGCCTGGCACTCATGTCACAAAGATAAGTTCCTGATTCGGTACACTTACTGAGCACCTGCTGTGTGCAGGGAGCTGAGCTATGGGATGGGAATGGGAGTAAACAAGGTACTTTTTACTTTTTTCTTTTTTTCCTCACTGCTAGACGGTGTGGGAACTTCTCACTCATTGGCTTCTTTCCCACACACCTGAAGAGCACTGACTGTGTGCCGGGCACTAGTGATACAAAAGAGTGTGACAGTTGTTCAGTCTGCATTTTCGATCATGGGCTACATGCCGAGTGCTGGGGCACAGAGATGAACAAGATCGGTTCCTTCACTTCTTCATGCCACAAGTGTTTATTGAGCACCTGTGTGCCAGGCCTCACAGACTCCCAGTTGGGTTGAAGAATGGTTGACTGAGTTTGATTCTTCCTGTACCCTCGGTCGTCTGAGCTGTGTGCAGACAACATCCCCCCACCACCCAAGAGGGAGGGTAGCTCTTCCGCCACCAGGGGCAAGCACAGGTCCTGGTGGCCCCACGCCACATGTTAGCCCCCCTGGAGGGGGCGCCAGTTGGAGACGGGGGCTGGGTGTCCCTGGCCCACTCCCGGTCCCCTGTGCTTTACCTCCTTGCCCTTGTGTCTCAGGTGTGGTCCCTGCCTGCTTGATGAAGTTGCTCTGTTCAAGCCTTTGGTGGGATCATGTGTTTGGGGGCTTTTAGGGGACCCAGCTGCACTGGGGCACTGCCCGTGGCCTGGGTAGGACATTTCCCAGCAAGGGCTGGAGGAGTTGCCGTGCCTTCAGCCTGAATCGAATGTCAGAACCAGCCAGCGGTGCTTCACCCTCTTGGGGATAACTTGCTTAGTTTTTTAATAAATGTTCCTGGTTGGTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130309-GLT25D1:NM_024656:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.348
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=PD(32.3=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGAGGCCGACTATTCCTA
R:
GTCGGTCTTGACGTGCTCATT
Band lengths:
295-566
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)