HsaINT0069707 @ hg19
Intron Retention
Gene
ENSG00000130309 | GLT25D1
Description
glycosyltransferase 25 domain containing 1 [Source:HGNC Symbol;Acc:26182]
Coordinates
chr19:17688004-17688276:+
Coord C1 exon
chr19:17688004-17688080
Coord A exon
chr19:17688081-17688169
Coord C2 exon
chr19:17688170-17688276
Length
89 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GGGGACTCTCCGGGCTGCAGGTC
3' ss Score
3.49
Exon sequences
Seq C1 exon
TGAAGCACCCGCCCGCAGAGCCCTCCCGCTTCATCTCGGCTCCCACCAAGACACCGGACAAGATGGGCTTCGACGAG
Seq A exon
GTGAGCTGGGCCTTCCCTGGAGGCGGGGCGGGGGCTGGAGGGCCCTTGTTTGCAGGGGCTGATCTGGCTGGGGACTCTCCGGGCTGCAG
Seq C2 exon
GTCTTCATGATCAACCTGAGGCGGCGGCAGGACCGGCGGGAGCGCATGCTGCGGGCGCTGCAGGCACAGGAGATCGAGTGCCGGCTGGTGGAGGCCGTGGACGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130309-GLT25D1:NM_024656:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=PU(1.1=7.7)
A:
NA
C2:
PF0175512=Glyco_transf_25=FE(18.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTCCCGCTTCATCTC
R:
GTCCACGGCCTCCACCAG
Band lengths:
162-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)