HsaINT0069709 @ hg19
Intron Retention
Gene
ENSG00000130309 | GLT25D1
Description
glycosyltransferase 25 domain containing 1 [Source:HGNC Symbol;Acc:26182]
Coordinates
chr19:17688766-17690418:+
Coord C1 exon
chr19:17688766-17688898
Coord A exon
chr19:17688899-17690290
Coord C2 exon
chr19:17690291-17690418
Length
1392 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
3' ss Seq
GGCGGGGCTTCCTCCCTCAGGTG
3' ss Score
8.62
Exon sequences
Seq C1 exon
AGCCATGAACACCAGCCAGGTGGAGGCGCTGGGGATCCAGATGCTGCCTGGCTACCGGGACCCCTACCACGGCCGGCCCCTCACCAAGGGTGAGCTGGGCTGCTTCCTGAGCCACTACAACATCTGGAAGGAG
Seq A exon
GTGTGTCCTGAGTGATGGGCGGGGCCAGAGTTATGACTCTAGATCTCATCGGAGATTTGGACGGGAAAGGGGTTGAAAGAGTTCCCCAAAGCCCCGGCTAGGCATCCAGCCTCAGCCATGGGACCCATGGCCTCTCTTTAGTGAATGATGCGCCACACCAGCTGTATCACCCCCAGGTGTACCTGCCATCCTTCCATTGCGCAAATGTGGAAACTGAGCCTGGGGGTAGGGGTGAGCCCTTTTGAGCAGCAGGTGGTGTCTGGGGCCTGGGACCTGTAAACAAATCCTCATTACTCCCAGCCTGGTCTCTGTGCTTGATGTTTAGTACTAGAAGTCATGGCCACAGAGCCACTTTAAACCAGCACCTGCCCAGTGCTGCTGGGGGCACTCACCAGCCCAGGCATCCTCATCCACCCTCAGAGGGAGAGGCTGTGATTGGAGGAGGGTGTCTGACTAGGCTTCGAACTTGGGCCATCAGGGCCGGGCATGGTGGCGCACACCTGTGGTCCCAACTATTTGGGAGGCTAAAGTGGGAGAGTGGCTTGAGCCCAGGAGTTAAGGCTGCAGTCAGCCAAGATCGTGCCACTGCACTGCAGACTGGACAGCAGAGCAAAACCGTGTCTCAGAAAAAAGAAAAATGGCTGGGCGTGGTGGCTCATGCCTGTAATCTCAGCACTTTGGGAGGCCGAGGCAGGCGGATCACCTTAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCTAGACTCTACTAAAAATACAAAAATTATCTGGGTGTGGTGGTGGGCACCTGTAATCCCTCTACTTGGGAGACTGAGGCAGGAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTGGGCTGAAATCATGCCATTGCACTCCAGCCTGGGCGACAAGAGTGACACTCCATCTCAAAAAAAGAAAAATAAAATCCGGGCGTAGTGGCACATGCCTGTAATCCCAGCTGCTCAGGAGGCTGAGGCAGAATTACTTGAACCTGGGAGGCGGAGGTTGCAGTTGAGATCGTTCCACTGCACTCCAGCCTGGGCGACAGGGCGAGACTCCGTCTCAAAAAAAAAAAAAAAGAAAAAGAAAAGAAAAACTTGTTATCGAATGTGAAGCCAAATGGGGGTGTGCGGCTGCAAGGCGGGAGGTGCATGAGGCGTGGGCATTTGAGGGGCTGGGAGGCCTTTCTCTTCTGAGATCCATTATGGACGGCAGAGGGCAGAGGTTTGGATGTCCAGATGTCCCTGGAGCTAGGAGAGGCAGGGAGATGCACTGGCTTCTCTACGGGTCTTTCAAACCTTCTCAAAGCAAAGCTCTGTGCTTTAGGGTCAGGCCTGGCCTTGGCCTCCCTGTGATGTGGCGGGGCTTCCTCCCTCAG
Seq C2 exon
GTGGTGGACCGGGGGCTGCAGAAATCGCTTGTGTTTGAGGATGACCTGCGTTTTGAGATCTTCTTCAAGAGACGTCTGATGAACCTCATGCGGGATGTGGAGCGGGAGGGCCTGGACTGGGACCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130309-GLT25D1:NM_024656:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0175512=Glyco_transf_25=FE(23.7=100)
A:
NA
C2:
PF0175512=Glyco_transf_25=FE(22.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGAACACCAGCCAGG
R:
ATGAGGTCCCAGTCCAGGC
Band lengths:
260-1652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)