HsaINT0069722 @ hg19
Intron Retention
Gene
ENSG00000204007 | GLT6D1
Description
glycosyltransferase 6 domain containing 1 [Source:HGNC Symbol;Acc:23671]
Coordinates
chr9:138523277-138531039:-
Coord C1 exon
chr9:138530963-138531039
Coord A exon
chr9:138523325-138530962
Coord C2 exon
chr9:138523277-138523324
Length
7638 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
GATTTTCTCTTTGTATCCAGGAA
3' ss Score
8.94
Exon sequences
Seq C1 exon
GAGAGAATGAATTCTAAAAGAATGCTGTTATTGGTTTTATTTGCTTTTTCACTGATGTTGGTTGAGCGTTATTTCAG
Seq A exon
GTAAATATAAAGTATTGATAAATCATGATCTTTAGTGATTGGCAGAGGTGGTTTTAATTTAATTAAATTAATTAATTTAATTTTTGAGACAGGGTCTTACTCTGTTGCCCAGGCTGGAGTGCAGTGGTGCCATATTAGCTCACTGCAGCCTTGACCTCCCAGGCTCAAGTGATCCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACATGTCACCACAAACAACTGATTTTTGAATTTTTTTTGTAGAGACTTATGTTGTCCAGGCTGGCAGAGATAATCTAAACTGCTGAGTTTTGTCCAAAGATATCAATACTACTCTCTAAATAAATCAGAAGTTACTTTCTCTTTGTGGGACAAAGGAAAATATACATATTTTAATTATTTCATTGTTAAACATTCAACAATTATTTACAGAGTGCCTTCTAGGTGCCAGGCTGTATTCTAGGTGCTGGGGATGCAGTGATAATGAAAGTGCCTGTCCTCAGGGAGCTTTCATTCTATTTGGAGAAGGTAGACAATAAATACACATAAAAGACAATGCCAGGGATATAATATTTTATAAAACAAGCATAATAAAAAATAAAGGTGACAATGCCATTTTAGATGAATTATAAACTATCTCAAGTTTCCATCTTTGTGTTTAATATAAATAATACTAAAGGTTCCATCTTTGTGTTTAATGTAAACAAGACTAAAGTCAACCTAATTCTATGCATATAGAAGCATGTGTACTAGAGGACGCATCTGTAAACCTGCTGGTATGGTTTGGCTCTTTCCCCACCCAAATCTCAACTTGAATTGTATCTCCCAGAATTCCCACGTGTTGTGGGAGGGACCCGGGGGAGGTAATTGAATCATGGGGGCTGGTCTTTCCCATGCTATTCTCATGATAGTGAATACGTCTCATGAGATCTGATGGGTTTATCAGGGGTTTCCACTTTTCCGTCTTTCTCATTTTCTCTTGCCGCTGCCATGGAAGACATGCCTTTTGCCTCCTGCCATGATTCTGAGGCCTCCCCAGCCATGTGGAACTGTAAGTCCAATTAAACCTCTTTTTCTTCCCAGTCTTGGGTATGTCTTTATCAGCAGCGTGAAAACAGACTAATACACCTGCTAATATTTTCCCGTCTAGAAAAACTCAAATTCTAGCTTTCTCCATACCACTCCTCATGGTCTTCTTCATAAGCAATGCAGTGTTTCCAGAGGCTATTTGAACAGCAGTAGTATCATGACAGATAATAGTTTTTAAAAATGAAAGCTTTGCACAACATGTATCTGGTAAGGGACTTGTACCCAAAATATGCAAAGAGCTCTTAAAATTCAACAATAAGGAAACAAACACCTAAATTTAAAAATTAAATATTGACATTTAAAACATTTAAAAATGAGCAAAAGAACTGAATAGAATCTCACAAGAGAAGATATACAGATGGGAAATAAGCGAACGCCAAGATGCTCAGTCTCATTTGTCATCAGGAAATTGCAACGAAAACAAGGAGATACCACTACACACCCATTAGAACGGCTAACACCCAAAAATCTAAAATCTGAAAACCAGCTTCTGGTGAGGAAGTGGAAGGACAGGAACTCTCATTCATTGCTGGTGGGAATGCAAAATGTTACAGGTACTGTGGAAGACAGTGTAGCAGTTCCTTAGAAAGCTAGATAGAGCCTTATCATGCCACAGAGCAACTGTGCTCCTAGGCATGTAGCCAACTGATTAAAACACTTATGTCCACACAAACCCTGCACAAGATGTTTATAGAAACTCTATTCATAAATGCCTCAAACCACTAACATACTAGATGCCCTTCAGCAGGTGGATGATAAACAAGCTGTGGTTCATGAAGTGCTCAAAACCAGAAACGAACAAGACGACTTTCAATAGGAGAAGGATAAACATGCTGTGGCTCATCTGTGCAACGGAATAACACCCAACAGTAAAAAGAAATGAGCTGGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAAGCTGAGGAAGGTGGATCACCTGAGGCCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCCATCTCTACTATAAATACAAAATTACCTGGGCATGGTGGTGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGATGAATCACTTGAACCTGGGAGGCAGAGGTTGCGGTGAGCTGAGATCACGCCATCGCACTCCAGCTTGGGCAACAAGAGTGAAACTCCATCCCCCCAAAAAAAAGAAAAAAAAGAAATCAGCTATCAAGCTGTTAGAAGACATGGAGGAACCCTAAATGCATATTGCTGAGTGCAAAAAGCCCATCTGAAAAGGCTGCGTGCTGTATAATTCTCATGTGACATTCTGGAAAAGGCAAAACTATATTGGCAGGAAAAAGATCAGTGGTTGCCATGGGGTGGAGGTGAGGGAGGGGATGAATAGGTGAAGCACAAAGGAATTTTGGGGGGCAGTGAAACTGTTCTGTATGACAGTGTAACCATGGACACATGTAACTTTGCATTTGAAAAAAAACCCACAGGACGTTACAGCACGAAGAGTGAAATTAACATATGTAAATTTAAAAAATTAGCTAGGAGGTTCGAGGTATCCTAGGAAGCAATGCAGACTGTGAGAACATAATCTATATCCCAAATGTACAGAACAATCCCACTGGAAGGGGTCAGGGAAAAAGCTGCTGACCTAAAATAACTTAGGAATGAGTGGAGTTTTTTTTGTTTTGTTTTGTTTTGAGACAGAGTCTCACTCTGTCACCCTGACTGGAGTGCAGTAGAGCGATCTCAACTCACCACAACTTCTGCCTCCTTGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGACTACAGGCACATGCCACCAGGCATGGCTAATTTTTTATTTTTAGTAGATATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCGCCTGCCACAGCCTCCCAAAATTCTGGGATTACAGGTGTGAGCCACAGTGCCCAGCTGGGTATGAGTGGAGTTTGAAAGTAAAGGCAATAGAAACTGTACATGAGCACTGTACATGTATTTGGGTCAATAAAGGTTTTTTCCCACAGGAATATGAGTTAACAATTCTGCTGCTGCTATACATGTATATTTGAATCAATTAAATAAATGGATGAGGCATGGGGGAGCAAGTTTCTTGCTGTTGGAGGGAACTTCATAGTTAAGCAAGAGAGGGGGCCACAGTGATCCACGTGGGAATGGATTGAAGCTGGAGACCTCAGCGTGAACTCACGTTTACCTTACTATGAACAGAGACATTTACGTGTCAACGTGTTTAAAGATATGTGGAAATACGCACAGGTTAGTGTCTATTTCCTTGCTCTGTTAGCTGAGAGGGCCTCGGAGGAAGGACACCCTGGAAGCAATGAGCACACCTGGTACCCAGATCTTGGCTTCTAGCACCATTCTCCAGGAAAGCAGCAGATCGTGGTTTCTAGCACCATTCTCCAGGAAAGCAACAGATCTTGGTTTCTAGCACCATTCTCCAGGAAAGCAACAGATCTTGTTTCTAGCACCATTCTCCAGGAAAGCAGCAGACCTTAGTTTCTAGCACCATTCTCCAGGAAAGCAACAGATCTTGGTTTCTGGCACCATTCTCCAGGAAAGCGACCAAGGCTTCTTGGAGAAGTGGATGGTTCTAGATTCGGACAGGAGATTTACAAGATGAGCCCAGAGCATCTCATAGTGCCAGGAGGGATGGAAGGGATTTTTTTTACAAATTCTATATTGAAGGGAGTATGTCACTTAAATGGGACATGGGAGCTAACTGGGAGAGCTCCCGATGGCCAAAGCTGAAGCCTTTTGAGCAAGAAAAGAAAGTAACATTGAATTATAACCCAAAGTATGAAACGAACTTCCACAAGTTCATACTGATGTAAATGAATGATTGGAGGAGCAAAAAGAAGGAAGAAAGGAAGGAAGACAGGTTGGCTGGATGTTGGAAGGATAGAAGGAAGGAAGAAGGGAGAAGAGACAAATCTCCCATATGCAGAAGAATTCCAAATCATGTCTGTAGATTCTCCACTACCAACGACACAGAACCTGACGCCCCAGTCCTGAAGTTTGGGTTGCGCGCAGCGCTTTCTTATAAAGAAAACGGGGAGAAAGAGCAGTCTTTGCGTGGAGAAGCCCGAAAACAGAACCCTAGCCAGGTGAACAAGGTCAGCATCAATAGGAAGTCATGATGGGGTCTGAGAGGCGGCTGCAGTCAAGAGGATCCTGTGCAGACAGGAGGCTGAGTGGAGTGTGGCGTGCTGGGTGGGATCCAGACAGGAGGCTGAGTGGAGTGTGGCATGCTGGGTGGGATCCTGAAAAAAAAAGAGACATTAGGGGAAAACAAGAAAATCCAACCAAAGTATGGACTCTCGTTAACAATACAGCATCAGTGTTGCTTCATGAATTGGAACAAAAGTACCCTACTAAAGCTAGATGTTAATAATAGGAAAAACTGGGTTGGTGCAGGGGATTCCGCATACTAGCTTTAGAACGTTTTTGTAAAGCTGAATCTTCTCTAAAAATAAAGTTGATTGAAACAAAAAAGGGGAAATAAAGTAAAAATAAATCATGCCAAAAAAAAAAAAAAAAAAAAAAGGAAAGGAAAAACAAGGCCAGGCATGGTGGCTTACGCCTGTAATTCCAGCACTTTGGGAGGCAGAGGCGGGCGGATCACTTGAGGTCAGGAGTTGGAGACCAGCTGGCTGACATGGCAAAATCCTGTCTCTTCTAAAAACACCAGAATTAGCAGGGTATGGTGGTGGGCACCTGTAATCTCAGCTACTTGGGAGTCTGAGGCAGGAGAATAGCTTGAATCTGGGAGGCGGAGGTTGCAGTGAGCTGAAATCGCACCACTGCACTCCAGCCTGGGAGACAGAGTGAGACTCTGTCTCAAAAAGCAAAACAAAATGACCACCCCCACTGCTTTGGTGCCATGTATTTTGTGTCATTTGTCCTCCTGGAGGATTGTACCTTAATGAAAAGGATGCATGGCCAGTTATAAAGAGTTTCAGATGCTCTGTTTGAGGATAATGATGGAGTAATCTTCAGCAGAAAGGGGACAGGGACCCATACGCTAATCCATGGCACGGATTCTACCATCTACCCCGGAACCACAGCCAGGGGCCTGGCATGTAGGAGGTGCTCACTCATTATTTGGTAAGAAATGCATAAATAAATGGATCTTGATTCTAGATATTTTGTTGTTGAAATTGCAATGGGTCTTTGTTCAAATTTAAAACTTGAATGATTTTTTTTTCATTTATTTAAAGAATAAGGAGTTATTCACTGGTTGGGTTGATCCATTTAGGAAATAAACATACAGGATGCTCAGTAACATTTGAATTTCAGGGAAACAGTGAATCTTTTTTAGCAGAAGTATGTCCTATGCAATAGTTACACTAAAAATTTATTCATTGCTTATCTTAAACTGAAGAGATGTCCTGTGTTTTGTCTAGCAAACTCCTCTATAGAAAAGGAATCTCAGGCCAGGTGTGGTAGCTCATACCTGTAGTCCCAGCACTTTGGGAGGCCGAGGTGGGCAGATCACCTGAAGTCAGGAGTTTGAGACCAGCCTGGCCCCGTGTCTACTAAAATACAAAAATAAAAAATATTAAAAAAACATTAGCCAGGCGTGGCAGTGGGCACCTGTAATCTGGGCTACTCAGGAGGCTGAAGCAGGAGAATTGCTTAAACCCGGGAGGTGGAGGTTGCAGTGAGTTGAGATCATACCACTGCACTCCAGCCTGGGAGACAGAGCAAGACTGCCTCTCAAAATAAAGATAAAAATAAAAATAAAAGTAGAAAAGTCATCTCAGCCGGCGAGAATATTTGTTGTCTAAATATTCCACAAACTGCAAAGCAAGGCTGGAGGGGGTCAACTGGGTACTAATGGCAAGAGAGGCAGGGGAAACGGCAAACCAAAGACAGCTCTAATCCCTGAAGACACCACTGTCTGCGTATGTGTAGGCTGATTTGTATGTAATGCACGTGTATGTGTGCTTGCGTGTGTGCGTGCACGTGTGTGTGGTGAGCTTGAGGATTTGGGGGTTGATTACAGAAAGGACAGGACAGGCCGTGCGTGGTGGCTCACACCTGTAATCCCAGCACTCTGGGAGGCTGAGGCAGGTGGATCATTTGAGATCAGGAGTTGGAGACCATCCTGGCCAACATTGTGAAACCACATCTCTACTAAAAACACAAAAAATAGCTGGGTGTGGTGGCGTGTGCCTGTAATCCCAGCTACTGGGGGTGCTGAGGCAGGAGAATCACTTGAACCCAAGAGGTGGAGGTTGCGGTGAGCTGAGATTGCGCCACTGCACTCCAGACTGGGCTACAGAGCAAGACTCTGTCTCGAAAAAAAAAAAAAAAAAATCTCTGTCGAGGGTGATTTTTTTCTTTAGGTTACAATAACCCTCTTCAGCCAAGGATGTTCTCTGCTCTGGTCATTCTGCAGGGCCCCAGAAATTAATAAGACCAGCACGGTCAAAGAATGGGGACTTTTTATTAAGTTCCCCCTTTTCGTTTCATGTTTTTGATGAAGTCTGGCATGGACAGTTTGGATTTTGATGAATCTACGCCTGGGGAATCCAATCATGGAATGTCTGTGGCTAAGGATACTCATGATAATGCCAGAAAGGGGGACGGACAGTCTTGAAGTCATTTCTTTCACTTAAAAATATCCCAGGGTTACTATCCTAGGCAACGCAGGGAGACCCTGTCTCTACAAATAATTTAAAAGTTAGCCGGGTGTGATGGCACACCCCTGTGGTCCCAGCTACCTGGGAGGCTGAGGTGGGAGGATTGCTTGAGCTCAGGAGGTTGAGACTGCAGTGAATTGTGATGATGCCACTGCACTCCAGCCTGGGCAGCAGAGTGAGAGCCTGTCTCAAAAAAAAAAAAATTGCTCCCAGGGTTATGAAACAGAGGTTGCCTAATAAGCTTGCTAATTTAATAATTAGCTTAAAAGCACAATTACACTCTAGAAGAACGCAGTGTTGAAATGCAAAGGGAGGTAGCTTGTGCCTGTGGTCCCAGATACTTTGGAGGTTGAGGTGGGAGGATGGCTTGAGCTCAGGGGTTTGAGGCTGCAGTGAGCTATGATCATGCAAGTGAGAACGCATCTCTTAAAATAAATAAATAAAATAAATGCAAACAGAATCAAAGATGAACTTCTGGATGCCTCCTCCCCACCTCTTTACAACATAGAGCAGAACCACTAATGTTTGGTAAATAAATTAATTGAATCTATGTTTTTGTCTGAATATACATTCTCTTAGCTGATCTGTTCATCTCCTTTTATTAAAAAAATCTTCCTCCCAACACTCATACTCTTTCCTGATATTCTGCTTTTGGCCATGACCTCCTTTCCCTACATCTCTTTCCTAGACTAGCTCATACCCTTCCCCACCCAGCTGAGATATCTCTTCTCTGGGAGGCTTCCCCTGACTCTGATTTGGGTTGATGCATGTTGACGAAACACCAAACGGGGCCTGCCTATCACAGGCTCAATAAACATTGAACAGGCTCCTTGCAATCACTTGATTTTCTCTTTGTATCCAG
Seq C2 exon
GAATCACCAAGTAGAAGAACTTCGGCTCTCAGACTGGTTTCATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204007-GLT6D1:NM_182974:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(3.4=37.5)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(6.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)