MmuINT0069492 @ mm9
Intron Retention
Gene
ENSMUSG00000036401 | Glt6d1
Description
glycosyltransferase 6 domain containing 1 [Source:MGI Symbol;Acc:MGI:1918353]
Coordinates
chr2:25666528-25669724:-
Coord C1 exon
chr2:25669639-25669724
Coord A exon
chr2:25666576-25669638
Coord C2 exon
chr2:25666528-25666575
Length
3063 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CCTGATGCTCTTTGTACCAGGAA
3' ss Score
7.9
Exon sequences
Seq C1 exon
GAAGGAATGAAGGCTAAAAGGAGGATTTTATTACAATTACTGACTTTCTGCCTTTTCCTGCTGCTGCTGGCAAAGATCCACTTCAG
Seq A exon
GTAAATACCGATGAACCGTGACCTTCAGGAAGGCCGAGGCAGCTTAAATACTGAATCTCGTCCAAAGATGTAACTGACACGTGGTCGAACCAGAAGTTACCTCCTCTCTGGGGGACTACATATGCACATTTTAATGCTTTTATTTCCAGATGCCAGACAGACTTTTGTTGAGTATCTTGTCCCAGGCTCCACTCTAGATGCTGAAAAATAGCAGCCCTGCCCACAGGGGTATTTCAGGCACAACGGAATTTCATATGTTATACGACAATGTTATGAAAATGGAGCCATGCAGAGGACAGTGCTTGATCGTTACTGTTGTCCTGGGTGTAGAACCCGGGCCTCCAGCATGCCACCGCAGTGCTCAGCCATGAGGCCACAGCCAATCTATAATTACATCAATTATAAACGACTTAAATGTTCCAGTTCTAGTTGTGGGCTGGAGAGATAGCTCAGAGGTTAAGAGTACTGGCTGCTCTTCCAGAGGACCTGAGTTCAATTCCCAGCAACGACATAGTGCCTTGCAGCCATCTGTAATGGGATCTGATGCCCTCTTCTGGCTGGCAGGCGTACATGCAGGCTGAATGCTGTACACCACATGCATGCCTGGTGCCAGAATAGGAGAGAAGAAGGTCTCAGGTCCCCTGCAGCAGGAATTACAAACTGTGTGGGTGCTGGGAATTGAGCCCAGGTCCTCAGGAAGAGCAACACGCTCTGTTACCTGCTGAACCGTCTTTCCAGCCTCCTGCACTGTTTTCTTAAACTCTCATTCTACGAGCATCCTGTTTTTCTCTGACAGATACTCTCAGAAAAGGTGCTTTCTTAAGGTGTCACTGAGAGTACACTCTGTAAATTGGAAGGGAAAATTGTCAGGGACAGAAGTTCTTACAATGACAGAGGCTGGGGACAAAAGATTAAAGAAGTCTATAGAGGTGGCCAAGTCTACCTATGTATATATAGGTCGGTAGGTGTGTAGTATGTATGTGCATGTGTGTGTATGTGTGTGTGTGTGCACATGTACACATGTGTGTGAGTGTGTATGGTTCATGGTTTTTGAAGAGACAGAGCATGAAATGGCAGCATTTACTGCTGGGCTTTTGGAGTAGGACTATATGAGGAAAAGCCCTTCCTCCCAGGAGCTTGGCTCCCAGACACAGGGGCAAAGTCTCTCAAAGAGAACTTGGGGGTCGAGGATAGAGGCTCATCCACTTGGGGAAGGATTTAGTCTAGCCCATGTTGTGCCCAGCCCCTGGAGTCTCCAGTCAGAAAGCCCACCTACAGGGTGAGTTGGGTGTTGGTAGTGGCTTTTGTTATGTGTATAATAGACTGGAAACGGCTGTGGAATGTTTTGGGTTGGTGCCCTCTGCTGAAGAAGCTGACAGCTCCAGTCCACCTCTGGCTTACTAGACCTCACCTAGACCTGGGCATGACACTCCCTGTGGACTGTTTCTGGGGACCTGGGCATGACACTCCCTGTGGACTGTGTCTGGGGACCTGGGTTCTTTAGGTCAGGCCAACCACAATTTCTGCTTTAGATCTAGAAATTAACACAGTCAACATACTGAAGCACACTGGCTTGGGTTTGTTTGTTTGTTTTATTTTAAAGATTTCTTTCTTTCTTTTATGTGTGTGAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATTTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCCACCTCTCCAGCCCCACAATGGCTTTTTTTTTTTTAAATCTTTTAAAATTATTTTTCACTAAGCATGTGGTGTGTGTGTGTGTGTGTGTCTGTGTATGGATAACGGGCATGTAAGTACAGGTGCCTGTGACTCTGGTCTTGGATGCCCTGGAGTCACAGATAATTGTGAGCCACCTGAATGAATTCTAGGAACTGAACTCTGGTCTTCTAGAAGACCAAGATGGCTCAGAGGTTAAGAGCACTGACTGGCCTTTTAGAGGGCCTGATGCTCTAACCACTAAGCCATCTCCCTAGCACCCCCAACTTAATGTTTTATTTAGCAAGTTCCCCACCTGTCATGTGTTGTCTGATGTGGGTCTCTTCACGGACTTTTGACTGTCTGTCCTGGGAGGCAGTCTATTTGGTGATGGGATATCTGTGCCAAGGCCATGTCTGATCATATCAGAAAAGAATGAGCTCCAAAGGTCAGTTCTGTTACAGAACACCCCTGGTGGCACACAGGAATCTGCCAGGCTGGTGATTAAACCAAATAGTTAATATGAGTGGCAGTCCTGACTCTTCACCTGTGGTAGGAAAAGGATGTCCCCTGCTGCTGGTCCAGAAGCAGGAAGCCCCGAATCCTTTATCACTTTATAATGTGACAGGCAGAGACTTTGCTCAATTGTAGCCATCTGACTGCTCTGAGCCTACTGAAGGTGGGCTAAGCTAAGCCATCGTCTTTGGGTTAAACTGCTTTTCAGAAGACAGACAGACAGACAGACAGACAGTATCTCCCAGTGTGCTTGTCTGGCTTCCCCCGCAGTAAATAAAAAGCCGCTGCACTCAAAAGGGTCAAGGTAGCTGGGTGTAGAGGCACACACTTTTAATCTCAGCACTCTGGAGGCAGAGGCAGATGGATATCTATGAGTTCAAGGCCAGCCTAGTCTATATGGTGATATCTAGGCCAGCCAGAGTTACATAGTAAGACCCTGTCTCATAGCAAAAGAAGGGGGAATCAAATGCTCCCCCCAACCTCTTTACACAACCCTTTTGAGTTTACCCCTTTTCTCCTCCCACCAAGGTACTTTCTTCTTCATTCTGCTGTTGTCTGTGACCTCTCCCCAAACCACTTATCTGTGTCCTAGACCAGCTTATCCCCTTCCAGACCAGGAGACACTGCCTTTTCCAGCTGCTTCCTTCGGGTGTCTCCCCTGGAGACTGAGGCTAGGTGGCGAGGGTGAAGAGCCATGGAGCTGAGATGGCCTTGTGTGGGCTCTGGGGGCACCGTGCCACAGTAACCTGATGCTCTTTGTACCAG
Seq C2 exon
GAACCACCAGGAAGAGGAACTTCTGCTCTCAGACTGGTTTAACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036401-Glt6d1:NM_001039095:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(2.4=25.9)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: