HsaINT0069912 @ hg19
Intron Retention
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:24852]
Coordinates
chr19:19741280-19744999:-
Coord C1 exon
chr19:19744612-19744999
Coord A exon
chr19:19741347-19744611
Coord C2 exon
chr19:19741280-19741346
Length
3265 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
TCTTGGGTTTCTCCCTGCAGATT
3' ss Score
11.87
Exon sequences
Seq C1 exon
GGTGGCTGCACGATTTATGGAAAACAAGATGTCTGCCAACAACCTGGGCATTGTGTTTGGGCCGACACTGCTGCGGCCGCCGGACGGCCCGCGGGCAGCCAGCGCCATCCCTGTCACCTGCCTGCTGGACTCTGGGCATCAGGCCCAGCTTGTGGAGTTCCTCATCGTGCACTACGAGCAGATCTTTGGGATGGATGAGCTCCCCCAGGCCACTGAGCCCCCGCCCCAAGACTCCAGCCCAGCCCCTGGGCCCCTCACAACCAGCTCCCAACCGCCACCCCCGCACCTTGACCCAGACTCCCAGCCCCCAGTCCTAGCCTCAGACCCCGGCCCAGACCCCCAGCACCACAGTACCCTGGAGCAGCATCCCACGGCCACACCTACCGAG
Seq A exon
GTAAGAACCCACTGGGCCCACAGCTATGGAGAGGGCCTTATCTCTGTTCAATTCTCTTACCTTCTCTTTCACCTTCCTTCCTTTTTAAAATTTCCTTCATTCTCTTCCTCCCTTCCTCATTTAACTTATGTTCATTCTGGAAGGAATAGTGAGGAATGAGCAGTGGGCAGTGATGATGTAACAAAAGGGGACAGCCCTGCAGAGGTACTAACATGGGTGATCATTCATTCCTCCAACAGAATATTTATTGAACATGTATTTTGGGCCAAGCATTGTCGTAGGCATTGCAGATACATCCAGGAGCTAAATATCCAAAGACCCTGCCCTCTCAGTGCCTGTGTTTTAGTGGGGAAAGAACAACCATATACATGACACAAAGTCAGTTATCTGGAATGTGATGAGGTGATGATGATAAGGGTAATGGATCATGAAAAGGTAGAGTAATGGCTGGGCGCGGTGGCACACGCCTGTAATCCCAGCACTTTGGGATGCTGGGGCAGGCAAATCACCTGAGGTCAGGAGTTCGAGACTAATCCAACCAATAAGGAGAAACCTGTCTCTACTAAAAATACAAAAATTAGCCAGGTGTGGTGGTGTGTACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCGCTTGAGCCCAGGAAGCAGAGGTTTTAGTGAGCCGAGAGCATGCCACTGCACTCCAGCCTGGACAATAGAGCAAGACTTTGTTTCAAAAAAAAAAAAAAAAAGTGGAGTAAGACACATGACACCAGGGAGCAGCACGGTGGGAGGTGGAGTTTGTATCACTAAGTAGGATGGTGGGGGCACGTCTTAGAGAGCAGACGGACTTGAGCAAAGACTGGAAGGACATGAAGGAGTGAGCTGGCAACATGGAGATCAGGTGAAGGGTGTTCCAGGCAAAGGGAACAGCCAGTGCAAAGGCCCTGAGGTAGGATCGTGCCTGGTGTGTTAGGACGCAGCCCCATCCTGTAATGAATGACAGGAAGGTGGTATGAAGTGATACCAAAGAGGAGTGGGCCCAGGTGGCTCTGCCAGCTATCCTGACCTTGCATCTGCTATTCACAGGCACAGACCACCACTGAATGTGCACCTGCTGTGCAGGGGACACTATAGAGGCTTCCTGTTGTCCTCTCCACAGTCCTGAGAGGTAGACAGTGTTAATGAAAATCATTTACAGATTAAACAATGAAGGCTCTGAGCAGTTAATGGCCCTAAAAGGGGACTGTAAGCAGTTGGAATCTTTTATTTTTTTTTGGAGACAGAATCTCACTGTGTTGCCCAACTGGAGTGCAGTGGTGCGATCTCGGCTCACCACAACCTCCGCCTCCCGGGTTCAAGCAATTCTAATGCCTCAGAGACAAGGTTTCGCCATGTTAGCCAGGCTGGTCTCCAACCCCCTACCTCAAGTAACCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCACACCCGGCCGCAGTTGGAATCCTTTATTTTTTTAGACGGAGTTTCATTCTTGTTGCCCAGGTTGGAGTGCGATGGCGTGATCTCTGTTCACCGTAACCTCCACCTCCTGGATTCAAGCGATTCTCCTGCCTCAGCCTCCAGAGTAGTTGGGATTACAGGCATGCACCACCACACCCAGCTAATTTTTTTTGTATTTTTAGTAGAGTAGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGCGATCCGCCCTCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCGGCCTAGAATCTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTAGAGTGCAGTGGTGCCATCTTGGCTCACTGCAAGCTCTGCCTCCCAGGTTCACGTCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCACCCGCCACCACACCCGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCTGGAGCCACTGCACCCGGCCGCCTGGCGTAGAATCTTTAACAAAGGTCACCAGTCTGGATCCAGAGCTCAGCTGTGAACCAGGAAGATAGCAGCACCCGCTGCTCCGGATTGCTAGAACAGTCCATGCCCAAGGCCTGTGCTGCTGGTATCTTGCTGCATCTGCCATTCCTGAGAGCAAGGATCTCTCCTGCAGCAGCCCAGAGCTGGGAAGCGGCTGCTGGTGAACTGTGGGTCTCTGAGAGCTGGAATGCCTCATAAAGTGCTCGGGACAGTGTCTGATGTGTAGACACTGCCAACCATTTAGCTAAGGATGGAACAGTAAAGTTGGTAAGGTTGCAGAGAGCAGCCCAGGATAGTAGTTCAGAGGCACCACCTGGTCCTAATGTGGAGAGGGCTGAGCCACTCCCTGGGCTGGCCATTTGCTAAACAAGGATTTTCCCACCCTCATGGAGCCCACGGTCCAGACTCAATGAATGACACTGCTCTATGCTGGAAGGGCAAGCAGTACACTTATTATTATTTTTGAGACGGAGTCTCATTCTGTCACCCAGACTGGAGTGCAGGGGCATGATCTGAGCTCACTGCAATCTCCACCTCCCAGGTCCAAGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGCATGCACCACCACGCCCGGCTAAATTTTGTATTTCTAGTAGAGACGGAGTTTCACCATGTTGGCCAGGCTGGTCCCGAACTCCTGACCTCAGATAATCCACCAACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGCACCACCATGCCTGGCCAAGCAGTACACTTATAAGGGCATCGTCTATCCCCAAACACCAAAACTGCAAAGGATGACAGGTGCACAGTCAGTGGTGGTCCATGCCCTGTGCATAGGAGGAGTTCAATGGTAGTCCACACCCAGTGCAGAGTAGGTGCAAAGTCAGGGGTGGCTGGCAGAGCCACCTGGGCCCACTCCTCTTTGGTCTCACTTCCTACCACCTTTCCCTCATTCATTACAGGGTGGGGCTGCGTCCTAACATACCAGGCATGCTCCTACCTCAGGGCCTTTGCACTGGCTATTCCTTTTGCATGTCCAGGAACAAGCCCTTGGCTCTCCAGGAATCTCAAAGAACTGGGATTTTAGTGTTGGGGTCTCATTCTTGGGTTTCTCCCTGCAG
Seq C2 exon
ATTCCAACTCCACAGAGTGACCAGAGAGAGGACGTGGCTGAAGACACCAAAGATGGGGGAGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639-GMIP:NM_016573:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.621 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(20.1=25.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)