RnoINT0065858 @ rn6
Intron Retention
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21351037-21353739:-
Coord C1 exon
chr16:21353352-21353739
Coord A exon
chr16:21351104-21353351
Coord C2 exon
chr16:21351037-21351103
Length
2248 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
TTCTGGGTTTCTTCCTGCAGCTT
3' ss Score
9.81
Exon sequences
Seq C1 exon
GGTGGCCGCTCGGTTTAAAGAAAACAAGATGTCTGCCAACAACTTGGGGATTGTATTTGGGCCTACATTGCTGCGGCCACCAGACGGACCAGGGGCCACCAGTGCCAGCCCTGTGGCCTGTCTACTGGACTCTGGTCACCAGGCTCAGCTTGTTGAGTTCCTCATTGTGCACTATGAGCAGATCTTCGGGATGGATGAGCTCCCTCTGACCTCTGAGCCCCTGACTCAAGACCCTGCCTTGGCTCCTGCACTCCTCGAATCCAGTCCCCAGCACCCAGCCTTACTCGTTGCCCAAGACTCACAGCCCCTGACCATAGCCTCAGATTCCAGCCCAGACCCCAAACAACACAGTGCCTTGGAGAAGTGTCCCAAGGTCGCGCCTCCTGAG
Seq A exon
GTAGGAGCCGGCTTGCCCCACAGATGAGGGGAGAGCATTGTCTGTGTTTATTTCCCCTTCTGCACAACTGGATATTGAATCCAGGGTTTGGTGTGCATTAGGAAGGGGCGTGGCGTGTGCTCACCATTACGTCACACCCTCGGCGCTCTCTTTAAGTTTCTTTTGGATTTTTAAGAACATTTATTTAGAGAGTCTGCAGGCACTTATCACAGCATGAGTGTGAAGGCCAGACGACAGCCTGCCCTTTTACCCTCTGGATCCTGGGGGCCGAATCCAGGACCAGAGCAGATTTCTTTCATTACACTCTTTATTTTATGTATTATGTGTGGGAGGGGAGAGTCATGTGGAGGTCAGAGACTTGTGTGAGAGTAGTTTTCCTTCTTCCCTGTTGGCCAAGCTTCCTGGGAGATGCCTGCCCAGCCTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTAAATCTTGGAGCAGAGTCTCTGTACATTGCCAGATTGGCCTTGAACTCACTCTGTAAGCAAGAATGGCTTTGAATTTAGTGATCATCCTGCCTCGACCTATTAAATAGCTGGGATGATATACGTGTCCTTTTTTTTTTTTTAATGTTCATTGGTGGTTTTCCTGCATGTGTCAGCTGAGGGTATCGATCCCCTGGAACTGGAGTTATAGTTTTGAGCTGCCATGTGGGTGCTGGGAATTGAACCCCTGTCCTCTAGAGGAGTAGCCACTGTTCTTAACCACTGAGCTTCTTTCCACCCTGACTTACTGACTCACTTGCCTGTTGATTCTGCTGTTTTATCTGACTTTGAGATAGGGTCTTTCTCTGTGATCATCCTGCCTCGGTGCTGTGAGTGCAGTCGGGTGGGCACCCCCTTTCCGAGCGTCTTCTTTTCTCTTCAAAATTTACTTGTGAGGGTAGGCATGGTGATGACTTTAATCCCAGCCCTTGAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGGTGGATCTCCAGGAGTTCAAAGCCTGTCTGGTCTACAGAATGAGTTCCAGGACAGCCTGGGGCTACACAGAGAAACCCTGTCTTGAAAGAAATGTATTTGTGCTTAGTCGTGGGGATGCATAGGCGCCATGGCGTTGTGGAGGTCAGAGGACATTTTCAGAACCAGCTCTCTCTTCCGCTGTGCTGCACACTCCAGGCTGGCTGACCCTGAGGTGTCTGAGTCTCCTGAGGGCTTCCCATCCTACCATAGAAGAACTACCCTCAGGGGTTTTTAATTTACCTATTCAGTGGGAGGGGCACACAGGCATAGGTGTGGAGGTCAGAAGACAACTAGCAGGCGTCAGTTCTCTCTGTGTGCCCTGTACAGTCTGGAGACCAAACAGACGTTGCCAAGTTCAGTGGCAATTACCTTGACCCACTGAGCCATTTTCCTGAATGTGGGCTTGTGCTGGCTGTGGGGATAAACTCGGGAGTAGAATAAACAGCTGGGCCGACTCGGCACCCATTGTTAGAAGTAGCAGGCCTTGCAGGTACATGAGTGAGCTTGATAGATATCCAAAGACCTCTCTCTTTTGGTGTCTGAATCAGAGAGGGAAAGGACCAGAAATAAGCATGAAGTTGGGCACATGCGACATTGTGAGGGGCTGTGAGGAAAGGAGGATGGAGTAAGGGCTGCCCATGGTGAGGTCTGGAGGAAATTTGCAGCAGGACATTTAACATGGGCAAGTCTTTTGGGACAGGTGGATTTGAGCAAAGACTGGCATGACATGAGGGCGAAATGAGGTATGGTCAAGTCTGGGAAAAGGTATGCCAGACAAAGGCCCTGGTGTGGGAGCCATCTGCAGCCCTGTCTTGTACCGAGTGGGTAAGAGCAGCAGGAAAGAGTCAAGAACCAAATGAATCTCGAGGCAAAGTGCTCGTCTAGCATGCGGGAGGCTCTGGGTTTGGTTCTCGGCACCAGAAAAGACGGTGTGGCTCTGATGGTTCCCCTGAGCAAAGGTGAGCACTGGCTACGTACAGCCCAGGTATTGAGGCAGGACCGACCACTCAATGAACTTGAAACTGAACTGCCATGCCAAAGAGCTCCCAGGACCCCCGTCTCCACCCCACAAGCACTCCCAGGCATGCTTCGCAGTTTACAAGGGTGCTGGAAACTCCAGACATGGGTTCTCATGCTTCCACAGCGAATCCTCTTAATTCTCTGAGCTTCCTCCAGAAATCCCTAAACAGGCCCTGTACTATGGGGGTCACATTCTGGGTTTCTTCCTGCAG
Seq C2 exon
CTTACGGCTCTGCAGAGTAACCGAAAGGAGGAGGAGGAGGAAGACACCAGAGATGGGGCGGGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257:ENSRNOT00000039607:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=PD(20.1=25.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]