RnoEX0038915 @ rn6
Exon Skipping
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21351037-21354227:-
Coord C1 exon
chr16:21354031-21354227
Coord A exon
chr16:21353352-21353739
Coord C2 exon
chr16:21351037-21351103
Length
388 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTACACATCCTCAGGGT
3' ss Score
6.61
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CTCACTGATCCCGTGGTCCCCTTCCACTTCTACGACGCCTTCATCTCTCTGGCAAAGACCCTGCATGCAGACCCTGGGGACGACCCTGGGACCCCCAGCCCCAGCCCTGAGATTATCCGCTCGCTGAAGACCCTCTTGGTGCAGCTGCCTGACTCTAACTACAGCACCCTGCGGCACCTGGTGGCCCATCTGTTCAG
Seq A exon
GGTGGCCGCTCGGTTTAAAGAAAACAAGATGTCTGCCAACAACTTGGGGATTGTATTTGGGCCTACATTGCTGCGGCCACCAGACGGACCAGGGGCCACCAGTGCCAGCCCTGTGGCCTGTCTACTGGACTCTGGTCACCAGGCTCAGCTTGTTGAGTTCCTCATTGTGCACTATGAGCAGATCTTCGGGATGGATGAGCTCCCTCTGACCTCTGAGCCCCTGACTCAAGACCCTGCCTTGGCTCCTGCACTCCTCGAATCCAGTCCCCAGCACCCAGCCTTACTCGTTGCCCAAGACTCACAGCCCCTGACCATAGCCTCAGATTCCAGCCCAGACCCCAAACAACACAGTGCCTTGGAGAAGTGTCCCAAGGTCGCGCCTCCTGAG
Seq C2 exon
CTTACGGCTCTGCAGAGTAACCGAAAGGAGGAGGAGGAGGAAGACACCAGAGATGGGGCGGGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257_MULTIEX1-2/2=1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.531 C2=1.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(39.6=100)
A:
PF0062022=RhoGAP=PD(20.1=25.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTGATCCCGTGGTCCC
R:
CATCCCCCGCCCCATCTC
Band lengths:
264-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]