BtaEX0015879 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015144 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr7:3619759-3622471:+
Coord C1 exon
chr7:3619759-3619955
Coord A exon
chr7:3620284-3620671
Coord C2 exon
chr7:3622405-3622471
Length
388 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTCCTTCTGCTCCAGGGT
3' ss Score
9.42
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CTCACTGACCCCGTGGTCCCCTTCCACCTCTACGATGCCTTCATCTCTCTGGCTAAGACCCTGCATGCAGACCCTGTGCACGACCCTGGGACCCCCAGCCCCAGCCCTGAGGTTATCCGCTCGCTGAAGACCCTCTTGGTGCAGCTGCCCGACTCTAACTACAGCACCCTGCGGCACCTGGTGGCCCATCTGTTCAG
Seq A exon
GGTGGCTGCACAGTTTGAGGACAACAAGATGTCTGCCAACAACCTGGGCATTGTATTTGGGCCGACGCTGTTGCGGCTGCCCGACGGTCCAGGGCCAGCAGGTGCCGGGCCTGTCACCTGCCTGCTGGATTCCGCACACCAGGCTCAGCTCGTCGAGTTCCTCATTGTGCACTATGAGCAGATCTTTGGGCCTGACGAGCTCCTCCTGGCCACTGAGCCCCTGCCCCGAGACCCCAGCCCACCCCCTGCGACCCTCCCAGCTAGCCTCCAGCCACCACACTTACAACTTGTCCTGGACCCCCTGCCCTTATCCCTAGCCTCAGACCGGGACCCAGACGCCATGCTCCTTGGTGCCCTGGAGAAGCATCCCGAGGCCACGCTCCCAGAG
Seq C2 exon
ATTTCAACTCTGCAGAGTGAGCAGGAAGAGGAAATAACCGAAGACATCAAAAATGAGGGAGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015144-'20-23,'20-21,21-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.431 C2=1.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(39.9=100)
A:
PF0062022=RhoGAP=PD(19.6=24.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCCTTCCACCTCTACGAT
R:
TCCCCTCCCTCATTTTTGATGT
Band lengths:
247-635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development