DreEX6098629 @ danRer10
Exon Skipping
Gene
ENSDARG00000062049 | hmha1b
Description
histocompatibility (minor) HA-1 b [Source:ZFIN;Acc:ZDB-GENE-071213-2]
Coordinates
chr22:17587732-17592959:-
Coord C1 exon
chr22:17592721-17592959
Coord A exon
chr22:17589808-17590042
Coord C2 exon
chr22:17587732-17587825
Length
235 bp
Sequences
Splice sites
3' ss Seq
CTTTTAATGTCTATTTTCAGGAT
3' ss Score
11.13
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CTTCCGGAGCCCATCATGCCCTTCCGCCTCTACAACAGTCTCATGGGTCTGGCCAAGGAAAGTCTGGCTGTTGTGGGTCCAGAGGGAGCTGACAGTGGTAAAGGACCAGACCTGATGGACCTTGGACCTGAGACGGATCCTGAACTCTTGGTCCTCGTGGACAGACTTAAAAATCTCCTGAAAGAGCTGCCCAAACCAAACACCGCCACGCTCCGCTACCTAGCGCGTCATCTGAGGAG
Seq A exon
GATTGCAGAACTGGAAGACGACAATAAGATGAGTCCCAGTAATCTGGGGATCGTGTTTGGCCCGTCACTGATGCGGCCCCGGCCCTCGGGAGCCACAGTGTCTCTGTCCTCTCTGGTGGATTACCCATATCAGGCCCGCATAGTGGAGACCCTCATCGTGTTTTATCCCTCCATTTTTCAGTCAGAGTCCAGTCGGCCTGCAAGCAGCAGCACCCGCACACAGTCTCTACAGCAG
Seq C2 exon
CAGAGCAGCATTGATGAAGAACGCTGCTCTAATGATGAACAAGGCCTCCCAGATGAACCTGCAGCTGTTGAATTAGACAAGCTGGAGGACCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062049-'19-25,'19-23,20-25=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.405 C2=1.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(44.6=100)
A:
PF0062022=RhoGAP=PD(18.1=40.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGTCTCATGGGTCTGGC
R:
CGTGGTCCTCCAGCTTGTCTA
Band lengths:
301-536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]