MmuEX6049718 @ mm9
Exon Skipping
Gene
ENSMUSG00000035697 | Hmha1
Description
histocompatibility (minor) HA-1 [Source:MGI Symbol;Acc:MGI:1917969]
Coordinates
chr10:79491402-79493121:+
Coord C1 exon
chr10:79491402-79491628
Coord A exon
chr10:79491718-79491928
Coord C2 exon
chr10:79493034-79493121
Length
211 bp
Sequences
Splice sites
3' ss Seq
CCAACTCTGCCCCTCCCCAGGAT
3' ss Score
8.57
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CTACCGGAGCCCCTTATCTCTTTTCGCTTCTACCATGAGCTGGTGGGACTAGCTAAGGACAGCCTAAAGGCCGAAGCCGAAGCTAAGGCAGCGAGCCGGGGTCGGCAGGGTGGGTCCGAGAGTGAGGCTGCAACCTTGGCTATGGTGGGCCGCCTGCGTGAGCTCATGCAGGATCTGCCAGCCGAAAACCGGGCCACACTCTTATACCTGCTGAAGCACTTGCGAAG
Seq A exon
GATCGTGGAAATGGAGCAGGATAACAAGATGACCCCTGGGAACCTGGGCATCGTTTTCGGGCCCACACTGTTGCGGCCTCGACCCACTGACGCCACCGTGTCCCTCTCTTCTCTGGTGGATTATCCCCACCAGGCCCGAGTTATTGAGACTCTGATTGTCCACTACGGCCTGGTCTTTGAGGAGGAGCCAGAGGAGGCGCCTGGCAGCCAG
Seq C2 exon
GAGGGGGCATCCACCCAGTGTGGCCAGCTGGAGTCTGCTGAGGGCATTGTCTTCCCCCTGCAGGAGGAGGCAGAGGACGGAAGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035697-'28-22,'28-21,29-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.158 A=0.310 C2=1.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(43.4=100)
A:
PF0062022=RhoGAP=PD(18.5=45.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCGGAGCCCCTTATCTCT
R:
CTCCTGCAGGGGGAAGACAAT
Band lengths:
293-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: