RnoEX6030595 @ rn6
Exon Skipping
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12728016-12729582:-
Coord C1 exon
chr7:12729356-12729582
Coord A exon
chr7:12729064-12729274
Coord C2 exon
chr7:12728016-12728103
Length
211 bp
Sequences
Splice sites
3' ss Seq
CCATCTCTGCCCCTCCCTAGGAT
3' ss Score
10.72
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CTGCCGGAGCCCCTCATCTCTTTTCGCTTCTACCATGAGCTGGTGGGATTAGCTAAGGACAGCCTAAAGGCAGAGGCCGAAGCCAAGGCAGCAAGCCGGGGCCGGCAGGACGGGTCCGAGAGTGAGGCTGCGACCTTGGCCATGGTGGGCCGCCTGCGAGAGCTCATGCGGGACCTGCCAGCCGAAAACCGGGCCACACTCTTATACCTGCTGAGGCACCTGCGAAG
Seq A exon
GATCGTGGAAATGGAGCAAGATAACAAGATGACCCCCGGGAACCTGGGCATCGTTTTCGGGCCCACACTGCTGCGGCCTCGGCCCACAGACGCCACCGTGTCCCTCTCTTCTCTGGTGGACTACCCCCACCAGGCCCGTGTCATTGAGACTCTGATTGTCCACTATGGCCTGGTCTTTGAGGAGGAGCCAGAAGAAGCAGCTGGCAGCCAA
Seq C2 exon
GAGGGGGCGTCCGCCCAGTGTGCCCAGCTGGAGACTGCTGAGGGCATTGTCTTCCCCCAGCAGGAGGAGGCGGACGATGGAAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220-'36-26,'36-25,37-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.184 A=0.225 C2=0.967
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(43.4=100)
A:
PF0062022=RhoGAP=PD(18.5=45.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCCTCATCTCTTTTCGC
R:
TTTCCATCGTCCGCCTCCTC
Band lengths:
304-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]