MmuEX6035995 @ mm9
Exon Skipping
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:72341132-72344399:+
Coord C1 exon
chr8:72341132-72341328
Coord A exon
chr8:72341622-72342009
Coord C2 exon
chr8:72344333-72344399
Length
388 bp
Sequences
Splice sites
3' ss Seq
TTCTCCCTACACATCCTCAGGGT
3' ss Score
6.61
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CTCACTGATCCCGTGGTCCCCTTCCACTTGTACGACGCCTTCATCTCTCTGGCAAAGACCCTGCATGCAGACCCTGGGGACGACCCTGGGACCCCCAACCCCAGCCCTGAGATTATTCGCTCGCTGAAGACCCTCTTGGTGCAGCTGCCTGACTCTAACTACAGTACCCTGCGACACCTGGTGGCCCATCTGTTCAG
Seq A exon
GGTGGCTGCTCGGTTTGAAGAAAACAAGATGTCTGCCAACAATCTGGGAATTGTATTTGGGCCTACACTGCTGCGGCCACCAGATGGACCCAGGGCCACCGGTGCCAGCCCTGTGGCCTGTCTGCTGGACTCCGGTCACCAGGCTCAGCTGGTTGAGTTCCTCATTGTGCACTATGAGCAGATCTTTGGAATGGATGAGCTCCCTCTGGCCTCGGAGCCTCTGACCCAAGACCCTGGCTTGGCTCCTGCATGCCTTGAATCCAGTCCCCAGCACCCAGCCTCACTTCTTGCCCAAGACACACAGCCCCTGACCATAGCCTTGGATTCCAGCCCAGACCCCAAACACCACAGTGCCTTGGAGAAGTGCCCCGAGGTCACACCTCCTGAG
Seq C2 exon
CTTGCAACTCTGCAGAGGGACCAGAGGGAGGAGGAGGTGGAAGACACCAGAGATGGGGCAGGGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246-'24-38,'24-31,26-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=0.461 C2=1.000
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(39.6=100)
A:
PF0062022=RhoGAP=PD(20.1=25.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTGATCCCGTGGTCCC
R:
CATCCCCTGCCCCATCTCTG
Band lengths:
264-652
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: