RnoEX0038914 @ rn6
Exon Skipping
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21353352-21354457:-
Coord C1 exon
chr16:21354320-21354457
Coord A exon
chr16:21354031-21354227
Coord C2 exon
chr16:21353352-21353739
Length
197 bp
Sequences
Splice sites
3' ss Seq
CACACTCCTGTCCCCACCAGCTC
3' ss Score
6.99
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GGCATCTATCGGGTCAGTGGGTCTCGGGTACGTGTGGAGCGCCTATGCCAGGCCTTTGAGAATGGCCGAGCACTGGTAGAGCTGTCAGGGAACTCTCCTCACGATATCACCAGTGTCCTCAAGCGATTTCTTCAGGAG
Seq A exon
CTCACTGATCCCGTGGTCCCCTTCCACTTCTACGACGCCTTCATCTCTCTGGCAAAGACCCTGCATGCAGACCCTGGGGACGACCCTGGGACCCCCAGCCCCAGCCCTGAGATTATCCGCTCGCTGAAGACCCTCTTGGTGCAGCTGCCTGACTCTAACTACAGCACCCTGCGGCACCTGGTGGCCCATCTGTTCAG
Seq C2 exon
GGTGGCCGCTCGGTTTAAAGAAAACAAGATGTCTGCCAACAACTTGGGGATTGTATTTGGGCCTACATTGCTGCGGCCACCAGACGGACCAGGGGCCACCAGTGCCAGCCCTGTGGCCTGTCTACTGGACTCTGGTCACCAGGCTCAGCTTGTTGAGTTCCTCATTGTGCACTATGAGCAGATCTTCGGGATGGATGAGCTCCCTCTGACCTCTGAGCCCCTGACTCAAGACCCTGCCTTGGCTCCTGCACTCCTCGAATCCAGTCCCCAGCACCCAGCCTTACTCGTTGCCCAAGACTCACAGCCCCTGACCATAGCCTCAGATTCCAGCCCAGACCCCAAACAACACAGTGCCTTGGAGAAGTGTCCCAAGGTCGCGCCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.197 C2=0.531
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(27.4=100)
A:
PF0062022=RhoGAP=FE(39.6=100)
C2:
PF0062022=RhoGAP=PD(20.1=25.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCCAGGCCTTTGAGAATGG
R:
AACTCAACAAGCTGAGCCTGG
Band lengths:
253-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]