DreEX6098628 @ danRer10
Exon Skipping
Gene
ENSDARG00000062049 | hmha1b
Description
histocompatibility (minor) HA-1 b [Source:ZFIN;Acc:ZDB-GENE-071213-2]
Coordinates
chr22:17589808-17593194:-
Coord C1 exon
chr22:17593057-17593194
Coord A exon
chr22:17592721-17592959
Coord C2 exon
chr22:17589808-17590042
Length
239 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTTTTCTTCAGCTT
3' ss Score
10.3
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GGCATTTATCGAGTGAATGGAGTAAAGACGCGGGTGGAGAAACTCTGCCAGGCATTTGAGAACGGCAAAGAGCTGGTCGAACTATCACAGTCATCTCCACATGACATCAGTAATGTCCTGAAGCTTTACCTGCGACAG
Seq A exon
CTTCCGGAGCCCATCATGCCCTTCCGCCTCTACAACAGTCTCATGGGTCTGGCCAAGGAAAGTCTGGCTGTTGTGGGTCCAGAGGGAGCTGACAGTGGTAAAGGACCAGACCTGATGGACCTTGGACCTGAGACGGATCCTGAACTCTTGGTCCTCGTGGACAGACTTAAAAATCTCCTGAAAGAGCTGCCCAAACCAAACACCGCCACGCTCCGCTACCTAGCGCGTCATCTGAGGAG
Seq C2 exon
GATTGCAGAACTGGAAGACGACAATAAGATGAGTCCCAGTAATCTGGGGATCGTGTTTGGCCCGTCACTGATGCGGCCCCGGCCCTCGGGAGCCACAGTGTCTCTGTCCTCTCTGGTGGATTACCCATATCAGGCCCGCATAGTGGAGACCCTCATCGTGTTTTATCCCTCCATTTTTCAGTCAGAGTCCAGTCGGCCTGCAAGCAGCAGCACCCGCACACAGTCTCTACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062049-'18-23,'18-22,19-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.138 C2=0.405
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(25.4=100)
A:
PF0062022=RhoGAP=FE(44.6=100)
C2:
PF0062022=RhoGAP=PD(18.1=40.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCCAGGCATTTGAGAACG
R:
GCCGACTGGACTCTGACTGAA
Band lengths:
292-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]