GgaEX6027993 @ galGal3
Exon Skipping
Gene
ENSGALG00000002559 | HMHA1
Description
NA
Coordinates
chr28:2395961-2397732:+
Coord C1 exon
chr28:2395961-2396098
Coord A exon
chr28:2397127-2397368
Coord C2 exon
chr28:2397495-2397732
Length
242 bp
Sequences
Splice sites
3' ss Seq
TCGCGCTGTTCTCCCTGCAGCTG
3' ss Score
11.54
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGCATCTATCGAGTGAACGGCGTGAAGACCCGCGTGGAGAAGCTCTGCCAGGCCTTTGAGAACGGGAAGGAGTTGGTGGAGCTGTCGCAGGCGTCCCCACACGACATCAGCAACGTGCTGAAGCTCTACCTGAGACAG
Seq A exon
CTGCCGGAGCCCATCGTGCCGTTCCGAATGTACAACGCGCTGATGGGAGCGGCCAAAGAGAGCCTGCAGGGCGGCAGCGACGCCAAAGGGAGGAGTGGGAAGGGGGGTCCGGAGCTGATGGACAGAGGGGCCGACACCGACCGCGTGGTGGTGAACCTCGTGCTGAAACTGAAGGAGCTGCTGAAGGAGCTGCCGTGGGAGAACACGGCCACGCTGCGGTACCTCCTGCAGCACCTGCGGAG
Seq C2 exon
GATCGTGGAGGTGGAGCAGGACAACAAGATGACCTCCAGCAATCTGGGCATCGTCTTCGGGCCGACGCTGCTTCGGCCCCGGCCCACGGATGCCACCATCTCCCTGTCCTCGTTGGTGGATTACCCCCACCAGGCGCGCGTCATCGAGGCGCTCATCATCTTCTACCCCACCATCTTCGAGGACAAAGACAGCAAACTGACCGCCGAGGGCAGCGAATTCAGCGCGGATCGCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002559-'20-22,'20-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.291 C2=0.113
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(46.4=100)
A:
PF0062022=RhoGAP=FE(44.9=100)
C2:
PF0062022=RhoGAP=PD(18.0=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCATCTATCGAGTGAACGGC
R:
GATGATGAGCGCCTCGATGAC
Band lengths:
298-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]