RnoEX6030594 @ rn6
Exon Skipping
Gene
ENSRNOG00000013220 | Arhgap45
Description
Rho GTPase activating protein 45 [Source:RGD Symbol;Acc:1308662]
Coordinates
chr7:12729064-12730414:-
Coord C1 exon
chr7:12730277-12730414
Coord A exon
chr7:12729356-12729582
Coord C2 exon
chr7:12729064-12729274
Length
227 bp
Sequences
Splice sites
3' ss Seq
TCTGAATGTGTCACCTGCAGCTG
3' ss Score
8.62
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GGGATCTACCGGGTCAACGGCGTGAAAACGCGTGTGGAGAAGCTGTGCCAGGCCTTTGAGAATGGCAAAGAGCTGGTGGAGTTGTCACAGGCCTCACCGCACGACATAAGCAATGTCCTGAAGCTGTACCTACGGCAG
Seq A exon
CTGCCGGAGCCCCTCATCTCTTTTCGCTTCTACCATGAGCTGGTGGGATTAGCTAAGGACAGCCTAAAGGCAGAGGCCGAAGCCAAGGCAGCAAGCCGGGGCCGGCAGGACGGGTCCGAGAGTGAGGCTGCGACCTTGGCCATGGTGGGCCGCCTGCGAGAGCTCATGCGGGACCTGCCAGCCGAAAACCGGGCCACACTCTTATACCTGCTGAGGCACCTGCGAAG
Seq C2 exon
GATCGTGGAAATGGAGCAAGATAACAAGATGACCCCCGGGAACCTGGGCATCGTTTTCGGGCCCACACTGCTGCGGCCTCGGCCCACAGACGCCACCGTGTCCCTCTCTTCTCTGGTGGACTACCCCCACCAGGCCCGTGTCATTGAGACTCTGATTGTCCACTATGGCCTGGTCTTTGAGGAGGAGCCAGAAGAAGCAGCTGGCAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013220-'32-25,'32-24,36-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.184 C2=0.225
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(26.0=100)
A:
PF0062022=RhoGAP=FE(43.4=100)
C2:
PF0062022=RhoGAP=PD(18.5=45.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCCAGGCCTTTGAGAAT
R:
GCTTCTTCTGGCTCCTCCTCA
Band lengths:
294-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]