BtaEX6040241 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020772 | HMHA1
Description
histocompatibility (minor) HA-1 [Source:HGNC Symbol;Acc:HGNC:17102]
Coordinates
chr7:45189527-45190417:+
Coord C1 exon
chr7:45189527-45189664
Coord A exon
chr7:45189897-45190123
Coord C2 exon
chr7:45190207-45190417
Length
227 bp
Sequences
Splice sites
3' ss Seq
TTGACCTTGCCACCTTGCAGCTC
3' ss Score
8.1
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGCATCTACCGGGTCAATGGGGTGAAGACACGTGTAGAGAAGCTGTGCCAGGCCTTCGAGAATGGCAAGGAGCTGGTGGAATTGTCGCAAGCCTCACCCCACGACATCAGCAATGTCCTCAAGCTCTATCTGCGCCAG
Seq A exon
CTCCCTGAGCCGCTCATTTCCTTCCGCTTCTACCATGAGCTTGTGGGGATGGCCAAAGACAGTCTGAAGGCCGAGGCCGAGGCCAAGGCAGCATCTCGGGGTCGGCCGGATGCCACAGAGAGGGAGGCTGCAGCCATGGCCATGGCGAGCCGGTTGCGGGAACTCCTACGGGACCTGCCTCGGGATAACTGGGCCACACTGCGGTACCTGATGCGGCACCTGCGCAG
Seq C2 exon
GATCGTGGAGGTGGAACAGGACAACAAGATGACACCAGGGAACCTGGGCATTGTGTTTGGGCCCACGCTGCTGCGGCCCCGGCCCACTGAGGCCACGGTGTCCCTTTCCTCCCTGGTGGACTACCCCCACCAGGCCTGCATCGTGGAGACCCTCATCACCCACTTCAGCCTGGTCTTCAAGGAGGAGCCCGAAGAGGCCCCAGGGGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020772-'20-23,'20-22,21-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.250 C2=0.239
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(26.0=100)
A:
PF0062022=RhoGAP=FE(43.4=100)
C2:
PF0062022=RhoGAP=PD(18.5=45.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTAGAGAAGCTGTGCCAG
R:
CTCCTCCTTGAAGACCAGGCT
Band lengths:
295-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]