MmuEX0021282 @ mm10
Exon Skipping
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:69817003-69818110:+
Coord C1 exon
chr8:69817003-69817140
Coord A exon
chr8:69817377-69817429
Coord C2 exon
chr8:69817723-69818110
Length
53 bp
Sequences
Splice sites
3' ss Seq
TGAAGACCCTCTTGGTGCAGCTG
3' ss Score
4.39
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GGTATCTATCGGGTCAGCGGGTCTCGGGTACGTGTGGAGCGGCTGTGCCAGGCCTTTGAGAATGGCCGAGCACTGGTCGAGCTGTCCGGGAACTCTCCTCACGATATCACCAGCGTTCTCAAGCGATTTCTTCAGGAG
Seq A exon
CTGCCTGACTCTAACTACAGTACCCTGCGACACCTGGTGGCCCATCTGTTCAG
Seq C2 exon
GGTGGCTGCTCGGTTTGAAGAAAACAAGATGTCTGCCAACAATCTGGGAATTGTATTTGGGCCTACACTGCTGCGGCCACCAGATGGACCCAGGGCCACCGGTGCCAGCCCTGTGGCCTGTCTGCTGGACTCCGGTCACCAGGCTCAGCTGGTTGAGTTCCTCATTGTGCACTATGAGCAGATCTTTGGAATGGATGAGCTCCCTCTGGCCTCGGAGCCTCTGACCCAAGACCCTGGCTTGGCTCCTGCATGCCTTGAATCCAGTCCCCAGCACCCAGCCTCACTTCTTGCCCAAGACACACAGCCCCTGACCATAGCCTTGGATTCCAGCCCAGACCCCAAACACCACAGTGCCTTGGAGAAGTGCCCCGAGGTCACACCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246-'34-46,'34-45,35-46
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.197 C2=0.461
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(27.4=100)
A:
PF0062022=RhoGAP=FE(39.6=100)
C2:
PF0062022=RhoGAP=PD(20.1=25.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGAGAATGGCCGAGCACT
R:
TTCCCAGATTGTTGGCAGACA
Band lengths:
135-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types