MmuEX0021282 @ mm9
Exon Skipping
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:72340902-72342009:+
Coord C1 exon
chr8:72340902-72341039
Coord A exon
chr8:72341132-72341328
Coord C2 exon
chr8:72341622-72342009
Length
197 bp
Sequences
Splice sites
3' ss Seq
CACACTCCTGTCCCCACCAGCTC
3' ss Score
6.99
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GGTATCTATCGGGTCAGCGGGTCTCGGGTACGTGTGGAGCGGCTGTGCCAGGCCTTTGAGAATGGCCGAGCACTGGTCGAGCTGTCCGGGAACTCTCCTCACGATATCACCAGCGTTCTCAAGCGATTTCTTCAGGAG
Seq A exon
CTCACTGATCCCGTGGTCCCCTTCCACTTGTACGACGCCTTCATCTCTCTGGCAAAGACCCTGCATGCAGACCCTGGGGACGACCCTGGGACCCCCAACCCCAGCCCTGAGATTATTCGCTCGCTGAAGACCCTCTTGGTGCAGCTGCCTGACTCTAACTACAGTACCCTGCGACACCTGGTGGCCCATCTGTTCAG
Seq C2 exon
GGTGGCTGCTCGGTTTGAAGAAAACAAGATGTCTGCCAACAATCTGGGAATTGTATTTGGGCCTACACTGCTGCGGCCACCAGATGGACCCAGGGCCACCGGTGCCAGCCCTGTGGCCTGTCTGCTGGACTCCGGTCACCAGGCTCAGCTGGTTGAGTTCCTCATTGTGCACTATGAGCAGATCTTTGGAATGGATGAGCTCCCTCTGGCCTCGGAGCCTCTGACCCAAGACCCTGGCTTGGCTCCTGCATGCCTTGAATCCAGTCCCCAGCACCCAGCCTCACTTCTTGCCCAAGACACACAGCCCCTGACCATAGCCTTGGATTCCAGCCCAGACCCCAAACACCACAGTGCCTTGGAGAAGTGCCCCGAGGTCACACCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.197 C2=0.461
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(27.4=100)
A:
PF0062022=RhoGAP=FE(39.6=100)
C2:
PF0062022=RhoGAP=PD(20.1=25.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGAGAATGGCCGAGCACT
R:
GAACTCAACCAGCTGAGCCTG
Band lengths:
245-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types