RnoINT0065857 @ rn6
Intron Retention
Gene
ENSRNOG00000027257 | Gmip
Description
Gem-interacting protein [Source:RGD Symbol;Acc:1565577]
Coordinates
chr16:21353352-21354227:-
Coord C1 exon
chr16:21354031-21354227
Coord A exon
chr16:21353740-21354030
Coord C2 exon
chr16:21353352-21353739
Length
291 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TTCTCCCTACACATCCTCAGGGT
3' ss Score
6.61
Exon sequences
Seq C1 exon
CTCACTGATCCCGTGGTCCCCTTCCACTTCTACGACGCCTTCATCTCTCTGGCAAAGACCCTGCATGCAGACCCTGGGGACGACCCTGGGACCCCCAGCCCCAGCCCTGAGATTATCCGCTCGCTGAAGACCCTCTTGGTGCAGCTGCCTGACTCTAACTACAGCACCCTGCGGCACCTGGTGGCCCATCTGTTCAG
Seq A exon
GTGTGCATGGGTCCCTAAGCTTTGAATCATGGCCCTCTTTCCCTGAACGTGTAACTGCTTACCTATGTGGTTCATATTAACCTCCAGCCTTTCATATTTCTTCTGAGCTATGGATACCCACACCTAACCCCAACACTGTCCATATGATTCCCTGGTTTCAAACAGTGACCAGAGACTATTTTCCTGTGGCCTGACCAAGTCACCAGTCTAGCTTACAGGTCCTACCCTTATCCTCCACTGAGGACAATGTTTCCAATTCCATGCCTGACTCTTCTCCCTACACATCCTCAG
Seq C2 exon
GGTGGCCGCTCGGTTTAAAGAAAACAAGATGTCTGCCAACAACTTGGGGATTGTATTTGGGCCTACATTGCTGCGGCCACCAGACGGACCAGGGGCCACCAGTGCCAGCCCTGTGGCCTGTCTACTGGACTCTGGTCACCAGGCTCAGCTTGTTGAGTTCCTCATTGTGCACTATGAGCAGATCTTCGGGATGGATGAGCTCCCTCTGACCTCTGAGCCCCTGACTCAAGACCCTGCCTTGGCTCCTGCACTCCTCGAATCCAGTCCCCAGCACCCAGCCTTACTCGTTGCCCAAGACTCACAGCCCCTGACCATAGCCTCAGATTCCAGCCCAGACCCCAAACAACACAGTGCCTTGGAGAAGTGTCCCAAGGTCGCGCCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027257:ENSRNOT00000039607:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.531
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(39.6=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(20.1=25.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCTGCCTGACTCTAAC
R:
CAAGGCAGGGTCTTGAGTCAG
Band lengths:
300-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]