MmuINT0071692 @ mm9
Intron Retention
Gene
ENSMUSG00000036246 | Gmip
Description
Gem-interacting protein [Source:MGI Symbol;Acc:MGI:1926066]
Coordinates
chr8:72341132-72342009:+
Coord C1 exon
chr8:72341132-72341328
Coord A exon
chr8:72341329-72341621
Coord C2 exon
chr8:72341622-72342009
Length
293 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TTCTCCCTACACATCCTCAGGGT
3' ss Score
6.61
Exon sequences
Seq C1 exon
CTCACTGATCCCGTGGTCCCCTTCCACTTGTACGACGCCTTCATCTCTCTGGCAAAGACCCTGCATGCAGACCCTGGGGACGACCCTGGGACCCCCAACCCCAGCCCTGAGATTATTCGCTCGCTGAAGACCCTCTTGGTGCAGCTGCCTGACTCTAACTACAGTACCCTGCGACACCTGGTGGCCCATCTGTTCAG
Seq A exon
GTGTGCATGGGTCCCTAAGCTTGGAACTGTGGCCCTCTTTCCCTGAACATGTAACTGCTTACCTGTGTGGTTCATATTAACCTTTGACCTTTCATATTTCTTCTGAACTCTGAACTGTGGATGCCCACACCTAACTTTAACACTGTCCATGTAACTAGCTGGTTTCAAGCCGTGACCAGAGACTTTTTTTGCTGTGGCCTGGCTAAGTCACCAGCCTAGCTTACAGGTCCTCCACTTGTCCTCCACTGATGCCTCCGATTCCATGCCTGACTCTTCTCCCTACACATCCTCAG
Seq C2 exon
GGTGGCTGCTCGGTTTGAAGAAAACAAGATGTCTGCCAACAATCTGGGAATTGTATTTGGGCCTACACTGCTGCGGCCACCAGATGGACCCAGGGCCACCGGTGCCAGCCCTGTGGCCTGTCTGCTGGACTCCGGTCACCAGGCTCAGCTGGTTGAGTTCCTCATTGTGCACTATGAGCAGATCTTTGGAATGGATGAGCTCCCTCTGGCCTCGGAGCCTCTGACCCAAGACCCTGGCTTGGCTCCTGCATGCCTTGAATCCAGTCCCCAGCACCCAGCCTCACTTCTTGCCCAAGACACACAGCCCCTGACCATAGCCTTGGATTCCAGCCCAGACCCCAAACACCACAGTGCCTTGGAGAAGTGCCCCGAGGTCACACCTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036246-Gmip:NM_198101:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.461
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(39.6=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(20.1=25.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGTACCCTGCGACACCT
R:
GGGGACTGGATTCAAGGCATG
Band lengths:
308-601
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: