HsaINT0069911 @ hg19
Intron Retention
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:24852]
Coordinates
chr19:19744612-19745512:-
Coord C1 exon
chr19:19745316-19745512
Coord A exon
chr19:19745000-19745315
Coord C2 exon
chr19:19744612-19744999
Length
316 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TCTCTTCACACCATCCCCAGGGT
3' ss Score
8
Exon sequences
Seq C1 exon
CTCACCGAGCCCGTGATCCCCTTCCACCTCTACGACGCCTTCATCTCTCTGGCTAAGACCTTGCATGCAGACCCTGGGGACGACCCTGGGACCCCCAGCCCCAGCCCTGAGGTTATCCGCTCGCTGAAGACCCTCTTGGTACAGCTGCCTGACTCTAACTACAACACCCTGCGGCACCTGGTGGCCCATCTGTTCAG
Seq A exon
GTGTGCATGGGTCCCTGAGCCTTGAAACGCGACCCTTTTCCCTGGACATGCGACTACTAACTTCCCTGGCTGACCCCTGACACTGACCTCTGACCTTTGACCTGTGTTTTCTGAACTCTGAACCTTAATCCATGATTCATAACTTTGGGTACTGACCCCTGACCTCCAGTTCTGGATATGTGGCTGCTGGTCTCAGACGACTTACACCTGTGACATGGGCAAGTCACCTCTAGGCTGGCCTGCGTGTCCCACCCTTACCCTCAGACCAATGAGCTTGCATCCTGTACCCTGACCTTTCTCTTCACACCATCCCCAG
Seq C2 exon
GGTGGCTGCACGATTTATGGAAAACAAGATGTCTGCCAACAACCTGGGCATTGTGTTTGGGCCGACACTGCTGCGGCCGCCGGACGGCCCGCGGGCAGCCAGCGCCATCCCTGTCACCTGCCTGCTGGACTCTGGGCATCAGGCCCAGCTTGTGGAGTTCCTCATCGTGCACTACGAGCAGATCTTTGGGATGGATGAGCTCCCCCAGGCCACTGAGCCCCCGCCCCAAGACTCCAGCCCAGCCCCTGGGCCCCTCACAACCAGCTCCCAACCGCCACCCCCGCACCTTGACCCAGACTCCCAGCCCCCAGTCCTAGCCTCAGACCCCGGCCCAGACCCCCAGCACCACAGTACCCTGGAGCAGCATCCCACGGCCACACCTACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639-GMIP:NM_016573:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.621
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(39.6=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(20.1=25.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTAAGACCTTGCATGCAG
R:
CCATCCCAAAGATCTGCTCGT
Band lengths:
342-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)