HsaINT0069911 @ hg38
Intron Retention
Gene
ENSG00000089639 | GMIP
Description
GEM interacting protein [Source:HGNC Symbol;Acc:HGNC:24852]
Coordinates
chr19:19633803-19634703:-
Coord C1 exon
chr19:19634507-19634703
Coord A exon
chr19:19634191-19634506
Coord C2 exon
chr19:19633803-19634190
Length
316 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TCTCTTCACACCATCCCCAGGGT
3' ss Score
8
Exon sequences
Seq C1 exon
CTCACCGAGCCCGTGATCCCCTTCCACCTCTACGACGCCTTCATCTCTCTGGCTAAGACCTTGCATGCAGACCCTGGGGACGACCCTGGGACCCCCAGCCCCAGCCCTGAGGTTATCCGCTCGCTGAAGACCCTCTTGGTACAGCTGCCTGACTCTAACTACAACACCCTGCGGCACCTGGTGGCCCATCTGTTCAG
Seq A exon
GTGTGCATGGGTCCCTGAGCCTTGAAACGCGACCCTTTTCCCTGGACATGCGACTACTAACTTCCCTGGCTGACCCCTGACACTGACCTCTGACCTTTGACCTGTGTTTTCTGAACTCTGAACCTTAATCCATGATTCATAACTTTGGGTACTGACCCCTGACCTCCAGTTCTGGATATGTGGCTGCTGGTCTCAGACGACTTACACCTGTGACATGGGCAAGTCACCTCTAGGCTGGCCTGCGTGTCCCACCCTTACCCTCAGACCAATGAGCTTGCATCCTGTACCCTGACCTTTCTCTTCACACCATCCCCAG
Seq C2 exon
GGTGGCTGCACGATTTATGGAAAACAAGATGTCTGCCAACAACCTGGGCATTGTGTTTGGGCCGACACTGCTGCGGCCGCCGGACGGCCCGCGGGCAGCCAGCGCCATCCCTGTCACCTGCCTGCTGGACTCTGGGCATCAGGCCCAGCTTGTGGAGTTCCTCATCGTGCACTACGAGCAGATCTTTGGGATGGATGAGCTCCCCCAGGCCACTGAGCCCCCGCCCCAAGACTCCAGCCCAGCCCCTGGGCCCCTCACAACCAGCTCCCAACCGCCACCCCCGCACCTTGACCCAGACTCCCAGCCCCCAGTCCTAGCCTCAGACCCCGGCCCAGACCCCCAGCACCACAGTACCCTGGAGCAGCATCCCACGGCCACACCTACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000089639:ENST00000203556:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.623
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(39.6=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(20.1=25.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTAAGACCTTGCATGCAG
R:
CCATCCCAAAGATCTGCTCGT
Band lengths:
342-658
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development