HsaINT0070573 @ hg38
Intron Retention
Gene
ENSG00000155265 | GOLGA7B
Description
golgin A7 family member B [Source:HGNC Symbol;Acc:HGNC:31668]
Coordinates
chr10:97850239-97859583:+
Coord C1 exon
chr10:97850239-97850315
Coord A exon
chr10:97850316-97859457
Coord C2 exon
chr10:97859458-97859583
Length
9142 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
CCGCCCGCACGTCTCCTCAGGTC
3' ss Score
8.27
Exon sequences
Seq C1 exon
CGGGGTCAGCACCGCGGAGACCCCCCTCGCCCGGCCCCGCGACAGCCTCCGAGCGCCCCCGGATCATGGCCACCGAG
Seq A exon
GTAGGGGCGAGCGCCCCACCCGCAGGCAGTGCCCGATTGCCGCGGGACCAAATGCCCTAGGGGTGGGCTGGGCAGGAGTGGGAGGCGGGAGTTGGGGGTGGGATGGGGTGATTCCCCAGGTCAGGTCTGGAGGGAGGAGGTAGGGGCTTAGTGAGGGCTCATCTCCCCCTTGCGTGTCAATCTTCCCCTCGCCCCACCTGAGCCCCCAAGCTGTCCGCGACACTTGTTGGCATTAGCGCCAGGGTTGCTTCAGGGCCCCAGGCTGGGGTTTCCCCTTCCCTGGACTTCACAAGTCCTGAAACCGCTTTCCTAGAGGGTTGGAGACGCGTGTGTGTGCGTGTGTGAGGGGAGGGAAGGCGGCTGTCCGCTGTTGCTATGCAGTCAGCTTCTGAACCCAAAAGCTTGGCTAAGGGATGACAGACTTACCTCTACATCCGCATTTCCTTTGCGGGAGGGAGGGGACAAAGACATCCTCAGGCTGAGAACCCAAATGGTTGGTCTCCACTTTTGCATATCACCCTTCTTGCTTTTTTACCCCATTCGAGTTTTTTTTTTTTTTTTGTCCCAGGGTGTCCAGATTTCCCCTCCATCTGATGGGAGTTTCTGCCTTCTTCAAGGTGCACTGATAGGTGTGTCACCTTCAAGCACTTGAAGGCTGAACCACGGGGCCTGTTAGCTAAGGGCAGAATCTTGGTATAATGCTTGAGGTCGAGGATTCCCCCCTCTACCCCTAGGGATTGCCCTTTCCCCCCTCATTTCAGGAGGGAGATTGGGCTCTTTATGTTCCCACTTTATACATGATAAAGGTGATGTGTGGAAAACGAAAGGACTAATTTGCTACTCCACACAGCATGTCAGCAGCAGAGCGGAAAGTTTTTGCCTTTGAATTTTTGGAGCGAAACTCAGGACATCAGGGTCTCCCCAGTTCTGATGTTGACTTCCTTTGTGGTGTCTCCCCATTTCCAATCCAGCTGGCATACACTGGGGGAGAGCAGAGGCCTGTGAATGATTCAATGCAGTGCTTCTGGGCATCCTGGTGAGCAGTGTGACATTAATACCAAGTGTGGCTGTTGTTATTCCACTCAAGTTTCCACCACAGAACAAGGTGCTGTTGCTTGGCATTGCTTGGCATTCTGACAAGGCACAAGGTTAGCTAGGCGGAGAGTTGCCCCTCAGGACTTGGTGTGAGGGCAAGCCCTGGGCAGACCCTGGGAGCTTGGTTTCTAGAGTAGAGGAATGCAGAGTACTCACAAAGCACCAAAGACATGGAGGACAGCAGGAAGAACAAAGGGAGAAACCAAGGAGTTGGTTACCTTCCAGATAGGGCTGCCAGACTGCAGCAGAGGCTGCTGTGTTGGACAGAAAAGGGGAACTTCAGCTACATGGGCATGGCTGGGCCAGCAGCGTGGGCAGAGAAGGCAGCTGCCTCTGCGATGTGATCTGACAGATTCCAACAGGCCCATCTGTCCCAGGATGTCTGCCATGGCCCACAGATTCCAACCAGCAGGCTTCTATCTCTATGTCAAGACAGCGTTTCCAGGAGGCTGCTATGAGACATGTGTGACTCTCCCCTGGGAGGGGCTCTGCTCATAACGCCTCTGAAAATATTGCGCTTTCCTGTGTACAAAGCACTATCGCATAAGTGATCTCTTTCAAGCCTCAGAGCAGCCCTATGAAGTGGGTAAGGATGGTGTTATTATGCCCAATTAACAGATGAGACAACTAAGGTTCAGAAACTTGCCTGGTCCCTGTGAAGGAGCCAAAGAAGGCATCATTATCCCATTTTACAGATGATGGAACTGAAGTGCTGAGACTTATTCAGGAAAATATGGCTAAAAGGTGGCAGGGATGGGATAAGAACTTGAGTCTTCTGCCTCTTTGGCCAGTGCTTTTTTTTCCTGCATCCAATTAGCCTATTGTGTCACCTGATAGAGAGGAGGGCCCTCCAGGTCTTGATGTGAAGCTTTGGTGGAGAGAGGGATGCAAAGGAAGTCATGAAGGGCTGGAGTGTGGGGACTCAGGCCCCCTGCTTGGCCTGGCTGGGTTGGTTTGAGGGCAGAGGGACAGAGGAAAGTCCCGGAGTGATGGGGAGCTGAGGACAAACATTCCTCACTTCACAATTTGGCCTTGGGTGGACTCTGATGGCAGAACTGAGGCAGGAAGCCTTAGCTCTGCCAGGGCACAGGACCTGCACGTATTCTGGGTTGTGGGGTGAGTCATTCTCCCAAGGCTGTTTTTACTGTTAGAATTGAGTTGAGATTACCAGGATAAACTTGTTGGGAGAGGGAAAACATCGCTTTAAGTTCCCATGATTATTCTGTTAGGATTCTCAATAGGAACTCCTCAGCTCTAGGAGAAGCTGTATTGAGAGAAGGAGAGAGGGAGAGGAAGGGGGTGGGGAGAGGGACAGAGAGGGAGGGGTGAGGGAGAGGGAAGAAATTCATGGGTGGAAACTGGGTCTTTTCTGTTCCCTAATTTCTGTTTAGGAGTTAGCATTAGGGGAGAGGTGTCTGTAAGGAACTCAGAGGAGGGATGGAGCCTCCTGAGTGATACACTGACCTCATTTGGAGAGCTGCAATGAGCCCATTTTCTGAGCAGCAAACCTCTGTGAATGTGTGTCACTGGGAGCAGGGTCTGCCCTGGGAAATAGTCCAGATGGCCAAGGACAACTGGGAAGTGCCTGGCTGGGAGGGGCTTCTCCAAGTGGTGGGGTTTGGTCTCTAAGAGATTTTTAAATGCATCCAAGTAGCGTTATTCAAGCAGGGTGTTTGGAGGTTTGATCTTTGAGGCATGGAATTAATGATGAGTAGACAACTGGGTCAGGCTTGAGCACTGGTACAGGCTGAGAAGAAGGGAGGTCTTGTGGCTGGTGTTTTATCCTTAGGCCTGACCTGGCTGTCTGTGACTCATGATCCTCACTCCTCCTTCACACCCCAGCCAGGAAGCAGAGTGCTGGCATCAGCGGAACCTCCTAATTCTCGATGCCTCACATGCATCCTATGGAATGAGATGGTTTTTAATGAGGATGAAGATGGCGCCAGGGGGGCACTCCTGTTGGACTTGGGCAGACTGGACCAGGAGCTCATTTGCACTCTAGAGCTTGTTCCTCTGCACCCCAGCTAGTTGACTGTCAGGTGAACAGGAGCCAAATGTGTGACCTGTGGTACCCACTCTCCAGGCAGACTCCCCCTCCTTCTCATACTGCAGTTTGAAAATTGGTACCCATGGGTCTCACCACTGATTTTCTTCCTTATGAAATGCTTCTCGGCCCTGTCTTCACTCTGCTGCCAGTGAGCCAGGGGTGGCAATGGGAGAGAGGGGCAGGGTTGAGGAAGGTGAGAAGTGGAGAGAGGCTCAGGTCTCTGGGTCAGTTAAGAACCCCCTGGGAGACACCCAGGGGAAACACAGAAACTGCAGCTTCAGAGAGAGTTGTGCACATATTTTGATATCCTCTGGTAGGATTTCAGAGCATCACGGATCTCTGCTGAAAACCCCACCAGCTTTCTGAAAACTTAGTAGCTGGCCAGTGGCCTGGAGCCTGGCTTAGCTCTTGCCCAAGGGGCCCCAGCCATGGGATTCTTTATTTAGAGGTCTTAAACTAGCAGCTCTAGAAATGAGTCTGGTCCATGGGTGTGCCTTACTTAGTCTGTTGAGTGCTTATACATTTTAAAAATGTATTGGAAATATTCAAAAATCAGAATATTTGATGTTAAAAAGATCTAGATTTCTGGCTTCTTTTGAGACACCAGAAGTGCTGGCAACCTGGGTATACATTCCCACGTGGCAATAGTCATCTGTCTCCTTGAGATGGGGCACCAGTTTTCTAATTAGCCCCAGGCCCCACCTGGCCCACTTATTGCTCAGCCCCTGTAAACATTTGCATTCATAATCCCTGATAAAGCCTCTAGAATGTCAGAGATGAAAGGGGCTTGAGCAATGATGTAGTTCCAGTTTCTTAGTTTCCAGTTGAAGAAATGGAGGTGCAGAGAAGGGAAGACTTTCCCAGGGCCATGTGGCCCAGGGTCAGGTCTCCTGCCCCCAGGTCAGTGGGCCATCTTTCCACTAGGGCTTCCTGGCACTTCACACTCAAGCCACCATGAATGGAGAAAACCAGGAGACCCTGCCTTGCCTTAAATCCGGCTCTTCACCAACTTCAGATGAGTCTGTAATATATGTACTCTATGTAGGTCTGGGAGACTAAGGCTCTGCCATATAAAATGTGTCTGATATCATCCTTTAGCAACTCCTCAGAGTTGCTCCTCCACAAACACTCTCCAGGGAGAGAAGCAGATCTCTGGTCACCCAGAGCCTGGATAGTAGTCTAAGGCTCAGGATATTGTTGGTGCTGAAAAGGGTGTTGACTTATCCTACTCTGGCTACTTGAGAACCTGTGGATCAAAGCCAAGAGGAAATGGGAATTTATTATGTAAGGTAGCACCCCCAAATCTTAATGTATTAATAGCTTAATACAATAGAAGTTTGTATCCTGCTCAGTGAAGTTCCAGGTAAGTGTTCCTGATCAACAGGTATTCCAGGCGGTGATTCAAGGCAGTGATTCAGTGATTCAGGGACCAAGGCTCTTCCCAACTTGTGGTGTCACTATCTTCAACACAGGGCTCCACCAGCCTCCATGAAAGGGGAAAGAGCAGGGAGAAATGGTACATCTTTATGAATCAAGCCTACACATGGCATTCGTCACTTCCTCTCACATTCTACTCAGTCATAGGGACACACCTAACTGCAAGGGAGGCTGGGAATTAATATAGCTGTATGCCTAGGAGGAAGAAGAAATGGCTTGGGTCAGTAGCTAGCCAGTCGCTAGAGACACACGCCTTCAGGACAGCACACAAATATGTGTGTACACATGTGTGCATTCAGGCACAGATTTAACACAATCCCTATCAAATTAGCAACATCGTTTTTCACAGTATTGGAAAAAACAATGCTAAAAAAAGAAAAAACAATGCTAAAGTTCACATGGAACCAAAAGAGAACCTGAATAGCCAAAGCAATCCTATGCAAAGAACAAATCCAGAGGCATCACATTGCCTGACGTCAAATTATACTACAAGGCTATAGTAACCAAAACAGCAGGTTTTGTATGGGTCAGAGGACAGGAAGCTGAGTCCATATCAGAATGGTTTCTTCCCTTTCTTTCCATTCTCACCACTGCTTTTCTCACCACCTCTTTAGTTTTTTCCATGGACTATTAGAAAGAGAATCATCCCTCCAACTGGCCCCTCACCCCAGTCTTGTCCACTTCCCACAAAACTGCTAGAATGAGCCTTCTAGGGGTAGGGGAGTCCATCCTCAAGATTGACTGACTTTCATAAGTTGGTTTTAGAGGGGCAGAGGAAGGCCATAGCCTTGTTCTTTACTCTTGAAAATACAACATTATAAAACCTTAACCAGAGCAGACATGTTAACAATTAACTTATTTATATTACCAAAGCATTCCTTATTTCTCCGAGTTATCATAGGTTCCTAGTAGATATCAAGGGGATTTCCTCAATGAAAACCTTGATTAGAGGAATCAACTCATATAAGCCTACAGGAGGGCTTATACATTATTTAATCCAGTCACAATACTTTGAGATCACATTTCGTACATACAGCAAGGTCCACCTGGATTTAGGAAAGTCACATATAGTGTTTTTGGATTCCCACCTTTTCAGGACCTTGATCTACCAATTATCTGCTCCTTCTACTTTATTGATAACCTTTCCTAGTTATTTATTATTTCCCAAGATTTTTGTTTGTTTTTAAATTTTATTTTATTTTAGATTCAGGGAGTACATGTGCATGTTTGTTACATGGGTATATTGCATATTGGTGGAGATTGGGCTTCTAGTGTACCCATCACCCAAGTAGTGAACATTGTACCCGATGGGTAATTTTTTAACCCTCACCCCCTCCCCTCTTTTGGAATCCCCAGTGTCTATTATTTTCATCTTCATATCCATGTGTACCTCTTGTTTAGCTTAGATTTATAAGTGAGAAAGTGTGTTTTGTGGTATTTGGTTTTCTGTTTCTAAGTTAGTTCACTAAGGATAATGGCCTCCAGCTCCACTCATGTTGCTGCAAAAGATATGACTTTATTATTTTGTATGGCTGTGTAGTATTCCATGGTGTATATATACCACATTTTCTTTATCCAGTCAAGTGTTGATGGTTGTTACTCTGAAGTTGGTTCTATGACTTTGCTATTGTGAATAGTGCTATGATGAACATATGAGTACAGGTGTCTTTTTAACATAATGATTTATTTTCCTTTGGGAGGATACCCTGTAGTGGGATTGCTGGGTTGAATGGTAGTTCTCTTTTTAGTTATTTAAGAAATCTTCATACTGTTTTCCATAGAGGTTGAACTAATTTACATTTCCACCCACAGAGTATAAGTGTTCCCTGTTCTCTGCATCTATGCCAGCATCTGTTGTTTTTTTAATAATAGCTATTCTGATTGGTGTAGCATGATGTCTCACTGTGGTTTTAATTTGCATTTCTCTGATGCTTATTGATGTTGATCATTTTTCATGCGTTTATTGGCAGCATGTATTTCTTCTTTTCAGAAATGTCTGTTCATGTCCTTTGCCCAGTTTTTAATGGGGTTGTTTTTTTTCTTGTTGAATTGTTTGAGTTCCTCATAGATTCTGGATATTAGTCTTCTGTCAAAGGCATAATTTGCAAATATTTTCTCCCTTTCTGTAGGTTGTCTGTATACTTTGTTGATTATTTCTTTTGCTGTGCAGAACTTTTTAGTTTAATTAAGTCCCATTTGTCTATTTTTGTTTTTGTTCCATTTGCTTTTGGGGACTTCATCATAAATTATTTGCCTAGGCCAATATCCAGAAGAGTTTTTCCTAGGTTTTCGTCTAGAATTTTTACAGTTTCATGTCTTAAATTTCAGTCTTTAATCCATGTTGAATTAATTTTTGTATATGGTGAGAACTAGGGGTCCAGTTTATTCTTTTGCACATGGTCAGCCAGTTTTCCCAGCACCATTCATTGAATAGGGAGTCCTTTCCCCATCCCATTTACAATAGCCAGACACACACACACACACACACACACACACACACACACACACACATTTAACCAAGGAAATGAAAGATCTCTATGAGGAGAACTACAAAACACTGATGAAAGAAATCGTAGATAACACAGACAAATGGAAAGACATCCCATGCTAAAGGATTGGAAGAATCAACATCATTAAAATGACCATGCGGCCCAAAGCAATCTACAGATTTAACACAATCCCTATCAAATTAGCAATATCATTTTTCACAGAATTAGAAAAAACAATGCTAAAGTTTATATGGAACCAAAAGAGAACCTGAATAGCCAAAGCAATCCTATGCAAAGAACAATCCTATGCAAAGAACAATCCTATGCAAAGAACAAATTACATTGCCTGACGTTAAATTATACTACGAGGCTATAATAACCAAAACAGCAGGTTTTGTATGGGTTACTGGTACAAAAATAGACACATAGACCAATGGAACAGAACACAGAACCCAGAAATAAAGCAACATACCTATAACCAACTGATCTTTAACACAGTCTTTCCCCGGTGTTTAAGCAAGTTTAAGTATCTGTCATCCTAAATCCTCCCCTTCAGCAGGAATCTTTCCTGCTTCTTGTGATCTGACCCTTGCCTCCTCTACAATCTCATCTCCCACTGTTTCTTATCTAATCTGCAAACCACCTCCATTCTTGCTGAAATCTGCCTCTAGTAGACCATGTGCTCTATCTTTGTCACTTTGCGCAAGCTTCTCTTTTTGCCTGGGTTGCCTTTTCCTCCCTCTCCACACTCTCTGCCTGCCCCCTGCTACTGGTAACCCCTGGACTTCCTTTATGACTCAACACAGGCTTCAGGAGGCCTTTTCTGAGTGAGCATTTCTGGGTAAGATGTTACTTCTCTGTGGCATTTGTCACTGTCTAATTCATTATATATTTACTTGTCTTCCTCCCTGGAGCTCACAGACTCTTTTGCTCAGCACCCCCAGAGCTTGGCACTAGGAGAGACTCAATAAATGAGAGCTGAGTGACTGAATGGATCCAGCTTAATTACATGGGATGAACTGGCTGTTGTTCACTCTGCCTTTGGGGCTTGGTCTCCACGTGTTCTCAGTGTTGGGCATATTTCAACCAGTGGGATGCTTGTCTTGAATGTGGGTGACTGAGGCTGGAGAGGTGGAAAAAGTGGGCTTGTTCTGTGGAATTGAGCCCATTCCCCTCAAACACTAGAGTCTGTGTCAATGTGAAGTCCACAGATGTGCACAAGGGACAGATATCTCCCCTCTCCTTCCTGCCAGGGAAGGCTATTTCTTCCATTTCTGGCCTCTGTCCATTTCATCTACACTATTCTCTGGAGAAGTTTGGACATTCATGGGCCCTTTGTTTCCTGTGGTGAGAAGTGCTGGATGTGAAAAGCATCTGGGGTGCTCTCTGGCCGGGGCCATAAAACTCGGCCTGGACCCCAGTCTCTGAGTTCAGGGGTACCTCAGGTATTCCTCTGTCCCACATGTTCCCTGCCTGCAACTCTGTTGTGAGCTCCACTTGGCAGGACTGGAGCACTGGTCTTGTTCAGTGCTGGGTTCCCCAGGCACAGGGTCTCACAAGTGAACGCTTGGTACTTGGTGAATGAATGAAAGTATGAAAGGTTCTTCTGTGTGTGTGTGTGTGTGCACGTGCACGTGCGAGAGAGACTCAACTTTGGCCCTGCTTTAGGCTTGTTAAAAATTTTTTTAGAGTTGGGGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCACAACTTACTGCAGCCTTTAACTCCTGGACTCCAGCAATGCTCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCACAAGCCACTGCACCCAGCCTTGCTTTAGGCTTTTAAAAGATCTCTCTGGGATAGCTCAGGGCAGCTTCTTGGGTAGACCCCACAGCCCTGCCTCCCTTGGCCTCTTGGAGCACCTGTAGAGTGCCCAGCTTGTCTCTGCATGCTGGGAACTTTCCTGGTGTTAGTGCTGGAAGACCTGCATTCTGGGAAACCCCTGCATTTGGGATATGCCGAGATGGATGGTCACTCTCAGCACATGCCGCCCGCACGTCTCCTCAG
Seq C2 exon
GTCCACAATCTGCAGGAGCTCCGGCGAAGTGCCTCACTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGCGATGGGACCATCTGTCAGTTCCAGACCAAATTCCCCCCAGAGCTGGACAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155265:ENST00000370602:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF102564=Erf4=PU(81.2=61.9),PF139001=GVQW=PU(5.3=2.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development