RnoINT0066336 @ rn6
Intron Retention
Gene
ENSRNOG00000015051 | Golga7b
Description
golgin A7 family, member B [Source:RGD Symbol;Acc:1583839]
Coordinates
chr1:261502862-261509698:+
Coord C1 exon
chr1:261502862-261503145
Coord A exon
chr1:261503146-261509572
Coord C2 exon
chr1:261509573-261509698
Length
6427 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
TCCCCTGTTCATCTCCTTAGGTC
3' ss Score
11.89
Exon sequences
Seq C1 exon
GAGCCCTGGCAGCAGGCGATCGAGCGGTGAGGAGCCTCGGGCGCGGCCTCGCCTCCCCGGCCCGGCTCCCGCGTCAGCACCGTGGACAGCGCAGACCCCCTCTCAGGGACCCCTCGGCTCGCAGGAACACTCTACGGGTTTCGGCGATCTCATCAGTACCGCGGACAGCGCCCAGGCCCCCGCTGGCCTTGACCGCTCTTCAAATCAGCACCGCGGACAGCCCCCCTGGACCAGCCCAGCAGCAGCCAAGGACTGGTCAGAACGCCCGGAAGATGGCCACTGAG
Seq A exon
GTAGGGGCCAGCACCTTAACCCGCAGGCAATGCCGCAGGGAATGATTCCCCACTAGGGGCAGACTGGGCACGAGGAGAAGGCGGGGGCGGATGAGGGTAGGGGGTGGTTCCCCGGGTTCATGGGGGGAGGTATGGAGTGGTCCCCTCACCTTCGACATGTCAATCTTGCTCATGCCACCCTGAGCCCCGGGAGTCTACTTGTTACCAATAACACCAGGTCCCCGCTGGGTTGGGGTTTCCCCTTCTGAACACAGGGTTCTGATTCCCCAGAGGTGGAGATCCCTGCACACCTGTGTAAGGGGAAGGAAGGTGGCCTACTGCTGTTGTTGCTATGTGGTGCAGTATCCTGCTTCTAACCCAGAGGCTTGACTAGGGAAAACAGACCTTCCTTCACATCCATATTTCCTTAAGAGGAGAACGTGGACAAAGACCTGCTCAGGCCCAGAACCCAGAGGGTTGGTTTTAATGAATCTCCTGTACCAGCCCCCACTTTTGAGAGTTTCATTCTTCTTTCATTTGAGTTGCTGGTCCCAGAGTATCCACATTTGCCCGTGTGTAGGGAGAGACTGCGTTCTTCACGGTGTGTCTCTAGACCAAGCGACCTGTTAGCTAAGGGCAAAATCTTGGCGTAATGTGTAAGAAGTCAGGACTTTTGTCTCTACCCCCAGAGGTTACTCCTCCCCTGGGAGATCTCTCTACTCATGATGAAACTCACACATGGAAGAAAGGATTGGCTCGGTACCCACACAGCATGCCAACAGCAGAGCTGAAAGTTTCTTTGAATTTTTGGAGCGTAGCAGCACACTGGGTCTTCCCAGTTCTGCCGCTGTTGTCTTTTGTGGTGCCTCCCCATTTCCAGCCTGACTGGAACTCTGCCAAGGAGGAGAGCAAAGGTCGGTGAATGATTCTGTGCGGTGCCTCTGGGATCCTGGCGAGCGGTATGACATCAGTACCAAGTGCTCCTGCCACAATTCCACTGGATCTCCTGATGTGGCTTGGCGTTGCTTATCTGCTGATGCAACACGAAGTTAGGGGATCCATGTCCTGCCAGAACCCCAACTGCAGGCAGGCAGGCCTGTCAGACCGCAGCAGCAGTCCCTAGTGTGGTCTGATGGACCCCAGAAGGCCTGTCTGTCCTACAGTCTCTCCCCTGCAGGTCTGCGGTGACCCACACACACAGTCTACCCTCAGACTCACACTTCTTGGCTGAGGCCAGGTTTCCAGGAAGCTGTTGGTAGTAGGCTTGATGACTCTCTCTTGGGAGAGGCTCTGCTCATAATGCCTCTGTAGGTACAACGCCATGGCACACAGAATGGCTGTGAGTGTGTGAGCAGCTCTGTGAAGTGGGCAAGGACGGTGTTATTATCTGCAATTAACAGACGAGTGGACTGAGGCTTGGAAGCTTGCTTCAGCCGGGTGAAGGAGTCAGAGAAGGCTTCATTACCTCATTCTACAGATGATTCAACTGCAGTGTTAAGACAACAGTTCTTCTTGCTCCCATGACAACTACCTTCACGGTTTGCATCGAGGATAGCGTATGCAGCTAGCCAGTGTGATGCTTACTAGAGTTCTAGGGGTCTTGAGTCAGGGCTTTGGAGGGAGGAGAGACATGTTAGAAAGAGCAAGAACAGAAGCTTTAAACCTGTGGGTCACAACTCCTTTAGACCATCAGACACATCAGATATTTACATTATGATTCGTAACAGTAGCAAAATTACAGTTATGAAGTAGCAACAAAAATAATTTTATGGTTGGGGGTCACCACACACGAAATGAGGAACTCTATTAAAGGGTCACAGCATTAGGGCCACTGGGCTAGAGGAACCTGGGTTCCCTGACTGACCATCTTGAAGGCAGAGGGACAGAAGACTGTCTAGGATGGACAGCTTGGCCTTGGCTGGACTCTGTTGTCGGTGCTGAGAGAAGAGACTCAGATTCTGCCAAGGCACAGGATGTATGGTGTCTGGGCCGGGGTGACTCATCCCCCTCGGCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTATTAGGATTGGATCGAGATTGCCAAGAAAAACCTGTTGGGGGAAGGAAAACCTCACTCTAAGTTCCCATAGTCATTTCCTTAGCTTTCTAAAGAGGAAATGGAACTGGGTAGGGGGAGGAGATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGAAAGGAGGGGGGTGGGGAGGAGGGAGGGAGAAGACAGCTTCCTATGGAAGCTGAAATTTTTGCTTCCTGATTTCTGTTTAGAAGTTAGCGTCAGGGGAAGGGTGTGTGCAGGAGGAACACAGAAGAGGGAAGACAGTTTGCTGACCTCATTTGGAGAGCTTTACTGGGCCTGTTTCCTGAGCAGTGAGCCTCTGCAAATGTGTGTCACTAGGAGCAGGGTCTGCCTGGGGAACAATCCAGATGGCCCAAGAACGACTGGGAAGCAGCCCTTGTGGGACGGGCGTCTTGCAGTGGGTTTGGGCAGGTTGGAGACGATTTAAGTGTGCCCAGGTAGCATTACCCAGGCAGGGTATTTGGAGGTCTGATCTCTGAGTCACTGGCTTGAGTTCGGGCCTGAGTGTAGGCTGAGAAGAAGGGTGGCCCTGTGCCCAGGCTTCCACCCTCAGGCCCTACCTGGCTGCAGTGACTCAGGATCTGCAGTCCTATTACCACCCAGCCCATCTCGTGATTCTTGAGCCGGGCCTCACCTGCACCTTATGGAGCGAGATGGTTCTTAGTGAGGATGGATCTGTGGACCAGCCGGGGCCTCCTGTTTGTCTTGGGCATAGCAGGCCTAGGAGCTCATTGCATTCCAGTGGCTGCCCTGTGCAAGCCCAGCCTGAGGGACTGACTACCAGGTGTACAGAGATGTGCTATGTCACATGCTGTGCTCTACCTCTAAAAGTCTCCTTTCAGTTGTTACACCGTGGCTTGGGAAATGGTGCCCACAGCCCCGGTTTTCCTCCTCATGAAACACCCTTGGTCTTGGCCTCAGCTGCCAAGAGGCTGGGGTGTGGTGATGGGGGTGCGGAGCTGAGGGCTGTGAGATTGAGGGGGTAGCTCAGTTCTCACAAACATCTAAGACACCCCTGGAAAAATACTAAGAAGGAACTTTCCAGGGAAGACAGAGCTTATAGCCTCGGGGAGTATTGGGGGTGGCTGTAACAACTCTTTCCTGTTTCCCTAAGGTTAAGAAGCTGGATAGAAAGTGCTTGGGACCTGGCTCTTGTCTCCATCTTTATTCTCAAACTAGAGCTATAGGAGTTAAGTCTTCATACACGCGTGGCCTTATTTAGTCACGTTAGTGCTTGCGCTCTTAAAAAAATTATCAGAAATATTTAGAAACCAGAGTAGCTGATATTAAGAAATTCTGGATTTGTGGCTTCCCTTAAAAAATTAGAAGCATCGGGCACCTAGTTGCACCATCTTTAATGGCAATGGCTGGCTCTCTAACAGACACAGGCATAAGCTCTCTTATGAGCCACAGACCCAACCCAGCCCACTGACTGCTCTACCTCTGGAAATGTTTCTGCCCTCCATTCCTGATAAGGTTTCTTTCAAGTCAGATATGGGAGGGGTTATGATTATGGGGCTCCTGTTTAGTATCTTTGAAGAAATGGGGGCCAGAGAAGGGCAGACATTTACAGGGCTATACTGCCCAAGATCAGGTTTCCTGCGGCCATGACCAGCAATGCATCTTTTGCTCCACCCCTTGGTACTTCTGGATGGAGCCACCATCAATGGAGCAAACCATGAGGCCCTCACTTGCCTAGAATCCTGCTCCTCACCGTCTGTGCCAGACACTGTGATTTGTGTGTGTCAACATGTCGGCCTGACTCTTACGTGTAAATCGAATCTCATCTGCTTTCTCCAGACCAACATACGTTCTCCAGGGACAAGCAGATGCTCAGTCACCTGAAGCCAGGAAAGGTTCTTGGGCTCAGAATACAGCTGTTGCTAGAGACTTGAGAGTGAATGAATCAGTCAAGAGAAAATAGGTCTGTAGTATTATGTAAGACACCACCTAACATCTTACTCATTGAAGATTACTTCCTTCTCAGTAGAGTCCTGAATGGAGCGCTTGCAAACAGCAGGCATATGTCCTCTGAGTGGTCATTTAGGGACTCAGGCCTTTTCCAGTCCCATTGTCTTTAATTGCCTGGCTCCTCTGGTTTCTGGGGGAAGGGAGGAGTTTCAGGTCTGTTTGAGTCAAATCAGATATTCAACACTTCCACTAATTTTACTCGGTGTGTGGCCACGCCCACGGGCGAGGGAGTCTTGGAATGAACTTAGTTGTGTTCTTAGGAGGGAGAAGAAATAGTTGGTCATCAGCCAGCCAGTCACTAAGAGACATACCATCATGGGTCATGGGAGCACCTGCATCTATGTGTACACAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTTCAGACAAAGGATGTTGCCTGTGGCAGGAAGCCAGGTCTGGGGCAGAGTGACTGGAGCAATTGTCTCTGCTTCCTTTCCATTCTTACCACTGCCTTCTGTGGTTTAGCACTTTTTTATTTTTACCCTGAACTATGACAGAAAGAGACCCATCCAATGGGTCCCTTAGGCTTACCCACTCCTACAAAACGGTCAGAGGGCTCCTTCTGGAGCTTAAAGAATTCATGGCTAGCTCTTGCTTGCTGGCTTTGGAAGGGAAGGGAGGGCCACAGCCGCTTTCCTCTCTCAGATACATTATGGTAAAACAATAACTAGGCTGAGTGGACACATTGATCATTAACTTGTATTACTAAAGCATGTTGATTTAAAGCATGGATTTTCCAAAGTTATCGTAGGATCTTAGTAGATATTAAAAGGGGGACTTTTTCAACAAAGATCCTGTCTAGTGGAATCAAGAAATGTCGAGACAAGAGGAGCACTTACATGCCATTTACTTCATTTCCCAAACTTTGAGATCAAACATCTTGCTTGAAGCAACATTTACCTGAATTTTGGAGAGCCTTATGTAATGCTCTCTGATTCCTACATTTCTAAGACCTTGATATACCCACCAATCATCCACTCCTTCTGTCTTGTCAATCTCTCTCGAGTCTTCTCTGCTTTTCGGCATCTCCAACCTGAAATCCTTCCCGTTGGCAGAGACCCTCCCTGTTTGTGATCTCACCCTTGACCACAGTGCACGTTTGTCTCCCACTGATTGCATCTATTCTGCAGACCGGCTTCGGTCATGCTAAATGTTGCCTCACGCCCCTGGAGCAGACCATGTCTTCATTACTCCCCTTTCCAGGGTCACTCTTTCCCCCTCTTTCTACTTCTGGCCAGCCCCTATCTCTGCGTATCCCTGACCTTCCCTTAGGACTCCATGCAGTCTCCAGGAAGGCCACATAAGCATCCCTGAGTAAATGTGACTTTGTTTCAACCATTCATCACGGTCTAATTCATTAGGCTTTGACTTGTCTTCCTCCCCGGAGCCCATAGACTGACTTTTGCTCAGCGTCTGGAGAGCCTGGCACTAGTAGGGACTCAATAAACGAGAGCAAAGTGACTGAATGGGTTCAGCTTAATTACACAGGATGAACTAGCGTTCCCTCCCTCTGCCTTCAGGGCCTGGTCTCCACGTGGTTCCAATGCTGGGTGTACTTCACCAATGGTGTGCTTGTTTCCAGTGACTGAGTGACTGAGGCTGGAGAGAGAGAAGAAAGAGACCTTGTTCTTTTGTGGTATAGCGCATACTCCCCTCCAGGGCCAGGTCAATGTCAAGTTTTCTGACTGGATGGAGAGACAGAAGTCACTCCATACCTTCCTTCCTACCAAGGAATGCTATTAATTCAGCACCTGGCCTCAGTCTACTTTATACTCAGTCATCTCATGATAAAAAGCCATTTCTAGGCCCCTTTCTGGGCTAAGAAAACATAGCGGGTGCTTCCTGGACTTCCTGAACTTGGCCTGGAGTCCCTTGGAGTTCAGGGATACATCCCAGGTTTCCCCTCTCCCACATGCTCCACTCCCCAGCCTGCTTGTGAATTCCGCTTGCAGGGCCTCAGGCTTCCATCTCTGTCTGTGCTGAGCTCTCCAAGCACAGGGCCGGCTGCCACTGGGCCTCACTTCTCCGTGTTAAAATCTGTTTCGGCTGTGATTGACAGCTCTGAGTGACTCATTTTGGTTCAGCTTTGCTCTTTCTTTAGGCTTCTGTATACACACTATGATGGCTTCAGGAAGCTCCTCACGTGAACCACAGGAGGCCTGCTTCCCTAGCCCCCCCCCCCCCCCCCCCCGCCCCGAGCCAGGCTGTGTGGCCAGCCTCTCCCTGTGTGCCAGGATTCAGTGGTGCTGGAGAGCCCTCCATGTCAGTGCACTGAGACTATGGTCACCTAAGCATGTGTCCCCTGTTCATCTCCTTAG
Seq C2 exon
GTCCACAACCTTCAGGAGCTCAGGCGAAGCGCTTCACTGGCCACCAAGGTCTTTATCCAGAGAGACTACAGTGACGGCACCGTCTGTCAGTTCCAGACCAAATTCCCACCAGAGCTGGATAGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015051:ENSRNOT00000020390:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF102564=Erf4=PU(22.6=61.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]