HsaINT0070854 @ hg19
Intron Retention
Gene
ENSG00000169347 | GP2
Description
glycoprotein 2 (zymogen granule membrane) [Source:HGNC Symbol;Acc:4441]
Coordinates
chr16:20321811-20326023:-
Coord C1 exon
chr16:20325979-20326023
Coord A exon
chr16:20322604-20325978
Coord C2 exon
chr16:20321811-20322603
Length
3375 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TCATATTTCTTGTATTTCAGGGT
3' ss Score
10.05
Exon sequences
Seq C1 exon
GTGCACAGTCTCCCGGTGTCATGAATGGAACCCCTAGCACTGCAG
Seq A exon
GTACATCATTTTCTCATGCCTTTCCCACAGCTTTCCCAACTCTCCTTTCTCTTTTCAATTCTGCCCCTTTTATGGCCCAGACCCTATGCTAGGGACACTGACATTAATCAGACCTAAGATTGGCCTTTGAGATGCCCACAGTATAGTGGAGGAGGTAGTCCTTTAACAAGAAATATATACTGAGTGCCCACTGTGTGCCAGGCCTTCTTCTAGGCACTGAAGATGTGATGGCAAACAAAACAGCCCAGGTGCCTACCCTCATAGAGCTTATGCACCAGTGTGGAAAGTAGAAAATAAAAAAGTAAACATGGTACTTTAGAAATAAAAGAAAGTGATGTGATAGATAATGCCTTAAAAAAAAAAGAAATTCATTTCTTTTTTTTTCAAACTCAAGAACTTTTTTTTTTTTTTAATTCATTTTACTTTAAGTTCTGGGATACATGAGCAGAACGTGCAGGTTTGTTACATAGGTATATATGTGCCATGGTGGTTTGCTGCACCCACCAACCTGTCATCTAGGTTTTAAGTCCCGCATGCATTAGGTATTTGTCCTAATGCTCTCCCTCCCCTTGCCCCCCATCCCCTGGAAGGCCCTGGTGTGTGATGTTCCCCTCCCTGTGTCCATGTGTTCTCATTGTATAGACATTCATTTCTGTCACACATAAATGAAGCTTAGAGGCAAGCTGTCCAAGGCTAGCGGGGCAGCACCATAAAGCTGTCAAAGACCCAGGCTCCTTCCAACTCATGCCTCCACCATCTTTGAGGTGTGGCCATCATCTTCATGTTCCAAGATGGCAGCCAGAGCTCCAACCTTTGTATCCAGGCAGCAGGATGGAGGGAACAAGGAAGAAGCCAATGAGTGTTAAAAGACATTCCCGAAAGCTGGCACCTTATATCTCCACTTACATCTCATTGGCCAGTGCTTGGTCACATGCCACACATTGCTGTGAAGAAAGCTAGGAAATGTAATCTTTACTCTGGGTGGGCCATGTGCCTAACCAATGTTTGATGGCTTTATTAGCAAGGTAGGAAGGAAGAATGACTATCAGAATGGATAAGTGGTCAGAAAAACTTTCAGAGTAAGTGATGTTGAAGCCAATTGAGAAAAATGAGTCGGAGGTGCAAATGTTAGGGGAATGAGCCCCATATGCATGGGAACATCAATAATTCATTGCACAAGTGAGACAGACACTTGAGCAAATAAATGACAAGCAAGTAGATAGTACAGAAAGAGTACATAAAAGGCTAAATAACTGTATTGGATAAGGTCTGGAAAGAATTTCACCAGGTAGTAACATCTGAATGGGGTTTTGATGAATGACTTGGAGCTAAACAAGCTAACTAATAAAAGAAATATCACACTCACACACACACACGCAGAGAGAGAGAGAGAGACAGAGAGACAGAGAGAGAGAGAGAACATTTTTACATTTTTTTACATATTTATAGGGTACTAGAAATATGTCTTGGACAAAATGGAAAGCACATACTATTAAGATTTGCTTTCCCACAAAATGACTTATATTGGTGAACCCAAACATGAAAAGGTTCTTTCCATCCTCAAAGCCCAAACTTAGATGGCAGTTTTTAAATTTCCCAAATAAGTCCAAGATGGACTCTCTATGTTCCGTGCTAGCATTCAGAAAATGCTAAGAAAAGTCACGCTCATTGAGAGGAGTGGTTAGAGCTCATTCTAAAAGCAGCTTAGGCCAGGTGCGGTGGCTCATGCTTGTAATCCCAGCACTTTGGGAGGCCAAGACAGGCAGACCACCTGACGTCAGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCTGACTCTACTAAAAATACAAAATTAGATGGGCATGGTGGTGCATGCCTGTAATCCCAGCTACTTGGGAGGCTGAAGCAGGAGAATCACTTGAACCCGGGAGGAGGAGGTTTCGGTGAGCTGAGATTGCACCATTGCATTCCAGCCTGGGCAACAAAAGCAAAACTCCATCAAAAAAAAAAAAAGCAGCTTGAAGTCAAGAACCTCAAGTCTCATTCCTTTCTGCCAGTCCTTCTGGTTAGCCCAGTGCCTGGAACAGTGTGGTTTCCCAGTAGAGTTTGCCAAATTGACTAATTTCTAGAATGGGTGGTAGATTTTGGACGCTTCTGGACAAGGAGGGGATCAGTCTGATGTTGAGACAGCCTACCCACTACAAGAGGGCACTTGTGGTTTTCATTGTCTGCTATCACAATCATCTTTGATGTTTTAGAATTAATTGAACATCAACCTGTTTTTATAATTATAACTTTTTGTCATGTACTGTTCTGAAATTTATGATATTTCTCTCCTCACTTCTAGGACATCAGCCAGTTACTTTGAAATTGGGGTAATGGGGAGATTTTACAATTTGGTAGTATGGCAGGAAGGCTCACATATTTCTCCTAGGCCCTCTGATACAAGACCATTATCATCTGGGATCCACGTCCTTCACTGAAACTGAGTACACAGTGATGTGCCAAAGAGATACAATCCCAGCAGAACTAGATCTTAGAGTCTAGCTTTTAAAACCAACATTTATATAGTGTTTACCATGTGCCAGGCAATGGTCTCAATGCTTAATATGAACTCACTCATTTAAGCCTTACAAAAATCCAGTGAAGTCACAGCTGCTATTAATATTTCTCTTTGGCATACAGGAAAATACAGGCAGAGAGGTTTAATAACTTTTCTGGGACTGCCCAGCTAGGTGTAGAGCTGAGATTCTAAGCTAAGTAATCAGGCATCAGAGGCAGTGCTTTTTAACCTCTGTGTCTTTCTGCCCCTTCAGTATTAGTCAGCATAAATAATGCTAGCTGCTGTAACAAACAGTCCCCAGTCTTCTGTGTCTTTAGACGACAGTATTGTTTCCCACTAAATCACTGGGGGAGGGGATGCAGTTCTGCTCCATGTAGTCGTTAGGAGCTCAGGCTTCTACTACCTTCTGGTAACTTCTGGTAACTCCACTATCCCCTGCAAGTCCTATCTTGGATCCTCTGCATCTGCTCCCTAGATGGTTGATGAGAGAGCAACAGGATATATAGGAGGCTTTAAGGATCAGACCTAGAAATGGCACAGATGACTTCTATGCACATTTTATTGACCAGATTCGGTCACATGGCCCCACCTAGTTGCAAAGGACACTGGGAAAAATTGCATTCCTGTGTGTCCAGAGGAAAATGAAAAAAATGGTTGGTGATTAGATTGCCTCTACCATGTGAGTCCCAGAGACTATAACTAGGCCAGATATCAAAGATGCTTTGCCTTTCTCATCCTTGTGTTGTGAAAGACAAAGAGGCCAACTTATGTTTGCTCCTGACTCCCAAAGCCCAACACTTGACAGTCATATTTCTTGTATTTCAG
Seq C2 exon
GGTTCCTGGTGGCCTGGCCTATGGTCCTCCTGACTGTCCTCCTGGCTTGGCTGTTCTGAGAGCTCCGCTGAGCATCTGGCCTTGAAGTTTGTGTTCTTCCCTCTGGCAATGGCTCCCTTCAGCACTTCTGCTTTCCACTCCAATTCACACAGGCTTGGTATTAATAGAATCAAGGCCAAGCTAGGTTAGGAAAAGGGAAGAGCTTTCACCTTCTTTAAAACTCTCGGCTGGGCGCAGTGGCTCATGCCTGTAATCCCAGCATTTTGGGAGGCTGAGGCAGGTGGATCACCTGAGGTCAGCAGTTCAAAATCAGCCTGGCCAAAATGCTGAAACTCCGTCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCAGGCGCCTGTAATCCCAGCTACTCGGGAGGCCAAGGCAGGAGAATTGCTCGAACTCAGGGGGTGGAGGTTGCAGTGAGTTGAGATTGTGCCATTGCACTCCAGCCTGGGCAACAGAGCAAGACTCTGTCTCAGGAAAAAAAAAAAAAAAAAAGAAAAGCAACATAGTGGGGTTTCTGTCAATCTGTCCTCGGCTGCCCTTCTCATTTGTTGATGGGACCTTGAAAGCAAGCTTGCTAGGTGCCCTCTGTGGCTCCAGCCTTTACCGGAAGTGTGGTGCATGTTTTTAACTTCAGGGAAGCGGTATCCTGTCACTGGGGTATGGGATGAGCATGGAGAAGAGGCACCAGCCACGATTCCTTCCTAAGCATCTCCTGTTCTGACTGCTCATGAATTGAAGAAACTGACCCTTGTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169347-GP2:NM_001007242:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)