RnoINT0066489 @ rn6
Intron Retention
Gene
ENSRNOG00000015716 | Gp2
Description
glycoprotein 2 [Source:RGD Symbol;Acc:621695]
Coordinates
chr1:189166747-189169680:-
Coord C1 exon
chr1:189169636-189169680
Coord A exon
chr1:189167033-189169635
Coord C2 exon
chr1:189166747-189167032
Length
2603 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TCGTGTCTCTTGTATTTCAGGGT
3' ss Score
10.13
Exon sequences
Seq C1 exon
GTGTTCAGAATCCTGATACCTCCAACGGGACTCCCCGAAGTACAG
Seq A exon
GTACATGGCTTCCTTATGCTTTTCTCACAGCACTACCAAGTCTTTCCTTTTGTCCTCCAACCCTCTACATCTATGCATCCCCTTCAATGTGTCAGGTCCTGTGCTTGGAACCATGGCTTAGTGAAATGAGGCTAACCCTAGAGTGGATCTAGCAGTGGAGCCAGGTGCTCAACAGCAAATGTTTACCAAGTAAGACTGTGTGCTCTAGGAACTGATAATACGATGCTGATCAAGTCAGAGCAGGTACCTTCCCTCAGAGAGCTTGTGTTCCAGGATGAGAAATAAATAAAAAAATAGTTTAGTTAGCAATAAAAGATGGGTGGTGTGATAGAAGTTACAGACATAAGTAATAAAGTCTCAAATTAGAGAGACGTTTATTTCTGTAAGACGAGTGGAATCTTATGTGTAAGAGAATCCAGGATAGAATGATCAGTCAAGGATTCAAGCTCCTTCCTGCTTGCTCTCTCATGTGAGGTCATCAGTTTAATGGTGTAAGTTAGCATCCAGAGTTCAGGACAGGGGAACAATGAAGGAAGTCAGTGAGTGTTGTGGAGCATGTCGACGGCTGGCCCCCAACACCTCCATTTATGTCTCCTTGTTTATTATCTAGCTATGTGGCCACCCCTGGCTGCAAAGGAACCTTGGAAATGGAATCTCTGTTTGGGATGGCCTATGCCCACGCAGTGTCTGATGGGGTAATGATCAAAGCAGGAAGAGATCATGGATTGGAAGAACTGTTAGAGAAATCATTTGACCTAGAGAGAAAGTGTCTCTGGATCGGGAAGTATTAGGTGAATGGAGCTGAACAGGCAGAAGCAACATCAGCTGACTAAATAAATGAGACATAGGCATAAGATGCTCAGGGACAAGCAGATAGAGGGAGCAGGAGTGCATGGAGGCCTAATTAACCATATCAGAGGAAGTCAAGAGAGTTCAGATGGCACAGTATCCAAATGGGGCTTTGATGAATGAGGTGGAATTTAAGGCCAGAGACATCAAAGAATGTGTTTTGGACAAGATGGAAAACATATTTTTTCTATCCTCTGAAAAACAGATATTTTAAACATAGGCAGGAAAATGGTCTTTTCATGTTCAAGACCTCAACTTTACGTCAGTCTAAATATGTCCCAGGCAAGAACAGTTCAGTGGTAACTTCTATGGTATCCAGAAAATTAAAACTCGTTGTGTGATTTTATGACATGCACAGAGCACAGAGCAAAAGTGCCTGGGAGTCAGTCACCTCAAGTCTCCCCCATTTTCGTCACCTTTTTAGCTTAGCACAGTGATCAGAACAGTGACTTTCCAACCTGCTGAACTGTCTCTCTTCTTGGGTGGGCTGTGAATGTTGGCACCTTCTAGAGGTGGAGGGAATGGATCTAACAAGAGGCAGCAAGCTGCCACAAGAGGGCTCTGTGGTTCTCATAGTTTGCCATCACTCAGATTCACTTCTGATGCTTCAGCATTAACTAGGTCTCATCTCTCATCGTAAAAACGCTCTGTCATAATTTGTGTGTCTGAAGATCATGTGCTCCCCTCCCCACTCTCTAGTATATCACCAAATTACTTTGAATTGTTGGGGGTGGAGAGATGTCTAATTTGGTAGTGGTGTCAAAGGGGGTTGACATGCTTATACAAAACATCTGCCATCAAATATTTCCCCCTCCCTAACACCGAACATACAATAGTACGCAGAACACACACACACACACACACACACACACACACGCACACACACACACACACACAAGATATCAAAGTCTAGTTTTCAAAACCAACACTTATGCAATGCTTCCCATGTTGTAGGCACATATTTTACATTTTATTTTATTGTGGCATCGGGGATTGAACCTAAGACCACCGGTTTGCCATGTAAGCAGGTTGTCACTGAGATATAGTTTCCAGTCCACAAGTGCTATACTAAATGCTTGATATGAACTGATTTATTGAAATCTTATGAAATCTAATATATCAATAGGTACTATAAATAGTTACATTTTCTATATAAGGAAAATTGGGCAAAAAAGACACATAATGTTTTGTCCACGTCTACCCAGGTAGTTGCGGACCTGAGGTTCCTATCTAAATAGTAAGCCTCAGAGGTGGTGCATTCTAATCATGTCTTTTGGTCTATTCTTTATTAGTCACTGTAAGTGATGCACAAACTCTAGCCAATAACCCTAAATCCTCTATGCCTTTGTGCTAGGGAATACAGTTATGATCTAGTCCTTAGAAACTCATACTCCTCTTACCCTCTGGTAATTCTTGGTAACATCACTATGTTCTGTGAGTCAGATCCAGGATATTTGGCAAATGAGAGAATATGCTGGAGGCTTTTATTACTACCCAACAAGGGAAATTTATAATTTTCATCCTTATTTCACTGACAAGGTCTAGTCTCCTGGTATCACCTCTTTGCAAAGAAGACTGAGAAGATCCCTGTCTGTGTACCCAGAAGAAAATGGAAAAAGCAGTTGTTGTCCCAACCAAATTTTGAGCTATGCTGCCTTCTGGTTTTTCTGCAGCAAGTGGCAAGGAGGCCATCTGGCATTGACTGTTAAGTGTCATCAAAGCTTAACATTTGACTCGTGTCTCTTGTATTTCAG
Seq C2 exon
GGTTCCTGTTGGCCTGGCCCACGTTCTTCCTGCCTGTCTTCCTGGCCTGGCTGTTCTGAGAGTCCAGCTGGGCACCTGGCCTTAAAGTTCTTCCCTCTGGCAATGGCTCATATCCACCGTTCAGTAGAACTGAATCCCTCTGTGAATCATGTGAACAGCCCAGGAAATGCAATGTGTATTGATAACTCCTGGTTAGAGTTGTCCTGTTAGTGGGCAGAAAAGGGCAAATCCCATGATTCTTTCAAAATCTCTCTTGTCCTGACAGCCGATGTCATGAATACATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015716:ENSRNOT00000021249:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]