HsaINT0071934 @ hg38
Intron Retention
Gene
ENSG00000160360 | GPSM1
Description
G-protein signaling modulator 1 [Source:HGNC Symbol;Acc:HGNC:17858]
Coordinates
chr9:136337441-136337961:+
Coord C1 exon
chr9:136337441-136337564
Coord A exon
chr9:136337565-136337845
Coord C2 exon
chr9:136337846-136337961
Length
281 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CCTCCGGTGTGTCTCCGCAGCGC
3' ss Score
10.74
Exon sequences
Seq C1 exon
GAGGAACCTGTCCCTGGTGAAGGAGCTGGGCGACCGTGCGGCGCAGGGCAGGGCCTACGGCAACCTGGGCAACACCCACTATTTGTTGGGGAACTTCACAGAGGCCACGACCTTCCACAAGGAG
Seq A exon
GTGAGCCGGGCAGGGTGACAGGGTGGAGGGGCCGGGCTGCTGCAGGGGCAGGGCTGAGCCACCCTCTTGGCGGTCCCTGAAAGGGCAGGGTGGTATGGCCAGGCAGCAGGCCCGCCCCACCGAGTCCTGGCCTCATCTGCACTTGGTCCTGCAGCTGCTAGCTGCTCACCCGGACACACAGATCTCTGGCCGGCCACCTGGGCAGGGAGGCAGCCCCTGTCCGCCCACGTCAGGCCCCGGGGCTGCGCCATGACCACCTGGCCTCCGGTGTGTCTCCGCAG
Seq C2 exon
CGCCTGGCCATTGCTAAGGAGTTTGGAGACAAGGCAGCCGAGAGGAGGGCCTACAGCAACCTGGGGAACGCCCACGTCTTCCTGGGGCGCTTTGACGTGGCCGCCGAGTACTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160360:ENST00000440944:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=FE(71.9=100)
A:
NA
C2:
PF134241=TPR_12=PD(10.5=15.4),PF134241=TPR_12=PU(38.0=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTGTCCCTGGTGAAGG
R:
TTGTAGTACTCGGCGGCCA
Band lengths:
238-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development