RnoINT0067123 @ rn6
Intron Retention
Gene
ENSRNOG00000018666 | Gpsm1
Description
G-protein signaling modulator 1 [Source:RGD Symbol;Acc:628682]
Coordinates
chr3:3776661-3777145:+
Coord C1 exon
chr3:3776661-3776784
Coord A exon
chr3:3776785-3777029
Coord C2 exon
chr3:3777030-3777145
Length
245 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GGGTTTGGATCTGTCTGCAGCGC
3' ss Score
7.1
Exon sequences
Seq C1 exon
GAGGAACCTGTCCTTGGTGAAGGAGCTAGGCGATCGGGCAGCCCAGGGCAGAGCCTATGGCAACCTGGGTAACACCCACTACCTGCTGGGGAACTTCACAGAAGCTACAACCTTCCACAAAGAG
Seq A exon
GTGAGCTGGGCCTGGGTGCTGGGGTGGGGATGCTACAACAGGAAGGCTTAAGATCACCCCCTCAACAGCACAGCAGCCGGAGAGCCACTGAGCCCCCTGCTCCTGTTGTGTTTGGTCTTGTGGTCCCTGTCTGCTCCCCTGGACACTCAGAATCAATCTGGCACCGTGGGTCGGGAGGCATCCCTCACCGTGTTCCTAGGGTTGCAGGGCTATGTGATGATGTCAGGGTTTGGATCTGTCTGCAG
Seq C2 exon
CGCCTGGCCATTGCTAAGGAGTTTGGAGACAAGGCAGCTGAGAGGAGAGCCTACAGCAACTTGGGCAATGCTCACATCTTCCTGGGGCGCTTTGATGTGGCTGCTGAACATTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018666:ENSRNOT00000067840:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=FE(68.3=100)
A:
NA
C2:
PF134241=TPR_12=PD(10.0=15.4),PF134241=TPR_12=PU(37.2=74.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTGTCCTTGGTGAAG
R:
TGTAATGTTCAGCAGCCACATCA
Band lengths:
237-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]