HsaINT0074010 @ hg38
Intron Retention
Gene
ENSG00000148702 | HABP2
Description
hyaluronan binding protein 2 [Source:HGNC Symbol;Acc:HGNC:4798]
Coordinates
chr10:113574289-113576004:+
Coord C1 exon
chr10:113574289-113574405
Coord A exon
chr10:113574406-113575896
Coord C2 exon
chr10:113575897-113576004
Length
1491 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
CTTCTTCCTGTGTGTCTTAGATC
3' ss Score
10.39
Exon sequences
Seq C1 exon
ACTGGACCCCTGACCAGTATGATTACAGCTACGAGGATTATAATCAGGAAGAGAACACCAGTAGCACACTTACCCACGCTGAGAATCCTGACTGGTACTACACTGAGGACCAAGCTG
Seq A exon
GTAGGTACCAAATCTCTTTCAGGGACTCTCCTGGGAGAAGGTCAGAGCGGAGTGTATGTGGGACCACATGCAAGGGCCTCTCTCTCCGCCTCTCTGGCCAGTATTGTGAAATAGCTATGGAAGAAATTATTTGGACTGGCTTTTTTTTCTGTTAGATTCATATGCTATGAGGACTGGGGAAGTTCTTAGAGACCATCTCCCCTACCCTCAAATGACAGATGAGGTAAGTGAGGCTAAGAGAGGAGCTGACTTGGCCAAGGTCATGCAGCAAGTTAATGCAGCATTGTCCAGGTTTCCTGATGCTGTGAATAGCAGCTGTATTCAAAATCACTCCCATAGCTTAGATTACAGGTCAGACCCTAAGGATGCAGGAAGTCCATGTCAGCCTTGAGTACCAGACTGTAGCATGTACACATTCAGCTTTGGGACTTTCCTTCCCTCATGCCTTTGCCAGAACTTTTCCTTCCCTTCCACTTTTTCTTTCTCCCTTCACTCTTTAGAAGCTTTCCACAATTGTTAGATTGTGTGTGTGTATGTGTGCATATGTGTGTGTGTGTATTCATACACATGTGCTCCTACCACACTTGTTTTTGTTTTTGTGGCTTCTTAACCCAAGCAGTGGGACAGAAAAGAAGAAGCTGGGTCCAAGCAATGCCATGTGACTAAACCAGGAGAAGGAATGGAAAGCACTTAGCAGCTGGAATAAAAGCTGTGTAACTGTGCAAAGTGGCCTGGAAGGCAGGGCCAAGATACAGGGCATGGGGGAACATCAGAAGGGACCATCAAAACAAGAGCAGGGCCCAGGGATCCTAGTTCCTGAACCAAAGAACAATGTGTGTGAACAGAAGGATAAAGAATTCCCCAAGGGAAGATCCATTCAGACAACCATGAAAAGCCACAGGCACAGATGAAATATGACAAAATCTAACTGAACAAGTAGTTGAAGAAAGATGAAGGCCACTGGGTCATTTCCTCCTTGCCGCCAATTCTTCTGTCACCCTCTTGCCTTTGGTCTTCTCTCCTGATGTTCAGAAAGCTTGCGTTTCATTAGGGGTGGGTTTTCTTTCCCCACTCCTGACCTCCACCCCTGGGCACTGGAAGTAGGGGAGGTCTTCAGGCTTGTGAAATACCTTCAGCATCAGAGACAGACCCTGTGGCACTCCCAGCAAGACTGGGAGGAGAAAAACACTGATGAGGGAAAAGGGGAGTTTCTCAATGAGAAAGGCCCCGTCCAAAGCCAGGCCGAGGGGAGACAGTCGTGGTTCCTTCTCGCCTCTCCTCTCACTAACCTGAATCCCTCTCTCTGGTCAGGTGACTGCAGTTTTCCTTGCTGTTTAGGGACAACATATGTTTTCCTCCTTTCCCCAGTTTCTGGCTCAGTAGTTACTCTCTCATTTGGGGCAGGAGACTGAAATTTGATGAAAAATTTGGAGGGGGGCGCTTCTCACCTGCCTTTCCTTACCAACATTGCCTTCTTCCTGTGTGTCTTAG
Seq C2 exon
ATCCATGCCAGCCCAACCCCTGTGAACACGGTGGGGACTGCCTCGTCCATGGGAGCACCTTCACATGCAGCTGCCTGGCTCCTTTCTCTGGGAATAAGTGTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148702:ENST00000351270:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.388 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0000822=EGF=WD(100=83.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACCCCTGACCAGTATGA
R:
TTCTGACACTTATTCCCAGAGAAAGG
Band lengths:
222-1713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development