HsaINT0074187 @ hg38
Intron Retention
Gene
ENSG00000187664 | HAPLN4
Description
hyaluronan and proteoglycan link protein 4 [Source:HGNC Symbol;Acc:HGNC:31357]
Coordinates
chr19:19261446-19262796:-
Coord C1 exon
chr19:19262730-19262796
Coord A exon
chr19:19261564-19262729
Coord C2 exon
chr19:19261446-19261563
Length
1166 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GCCCCGTGCCCGCCCCCCAGGTG
3' ss Score
10.57
Exon sequences
Seq C1 exon
CCGGGTGTGCGGGGAGCGCAGTCCGGGTGCGTAGGGGCCGCTCGGCGGGGGCCGCGCGGGCAAGATG
Seq A exon
GTAAGTGGGGCTGCGGGCGCGGGTGGTGTGTGCCCCGTCTCCCCAATCTTGGATTCTATATCTCTCTGCCTCTGAATCTATATCCCTCTGAGTTTCTTCTGTCTCTTCCTTTTCTCTGTCTCTCACCCTCTTTGATCTCTCTTTTTGGCACTCTAGGTTCTCTCCCTCTCCATTTCTCCCTGCCTCTCTCCATCTCTGTCATCCTCTCTGCCTTTTTCCTCTCCTCTCCGTTTCTGTCTTTCCCTGTCCCTATCTCTCCCTCCTCTTCTCTGAGTCTCTCTGCCTCTGGCACTCTCCTGTCTCTCCCTCTCCCTTTCTGTCTCTCCCTCTCCCTCTCTGTCGCTCCCTCTGCCTCTCTGTCTCTCCCTCTGCCTCTCTGTCTCCCTCTGCCTCTCTGTCTCTCCCTCTCCATCTGTGTCTCTCCCTCTCCATCTCTGTCTCTTCCTCTGCCTCTCTCTCTCTCCCTCTGCTTCTCTGTCTCTTCCTCTCTGTCTCTCCCTTTCCATCTCTGTCTTTCCCTCTCCATCTCTGTATCTTCCTCTGCCCCTCTGTCTCTCCCTCTGCCTCTCTGTCTCTCCCTCTCCATCTCTGTCTCTCCCTCTACATCTGTCTCTTCTTTTCCATCTGTCTCTCCCTCTCCATCTCTGCCTCTCTCTCTTCCCTTCCCCTTTTTCTGTGTCGCGCACTCTCTTCTCTGCCTCTCCCTGCCTTTCTCTCTGTCCCTGTTCTCTCCCCGCGTCTCTCCCTCTTTCTCTCCAGCTCTCCCCCCTCCCTGCCCGCCCCGGCCCGGTTTGCTGCAGTCTCCTGGCGCACGGATAACCTTGCTGCCGCCGCTCCTCCAGCTCTTCCCCACCCCCCTATCCCCGGCCCGGGCCAGGGCCAGAAGGGGGCGGGGCAGCGAGCCTCGGGTTTTGGGGTGGGGGGGAATGAGGCGGGATCTGGGGCAGGACTGAGGGCGGGGGGGAGTCTAGGGGCGTGGGTTCTTGCAGAAGCTAGGATGTGAGGTCCCAAGAGGAGGAGGGGGAGTTCTCCAGGACCCCGGAAAGGGTGGGGACATGGGCGTGAGAGAGGTCCTCGCTGTGGGGAAGGCAGGCCCGGGAGGGAGCCAGGCCTCCGAAAAGCCAAGGCTGGGAGGCTGGACTGAGCGCCCCGTGCCCGCCCCCCAG
Seq C2 exon
GTGTGCGCTCGGGCGGCCCTCGGTCCCGGCGCGCTCTGGGCCGCGGCCTGGGGCGTCCTGCTGCTCACAGCCCCTGCGGGGGCGCAGCGTGGCCGGAAGAAGGTCGTGCACGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187664:ENST00000291481:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains