MmuINT0075930 @ mm9
Intron Retention
Gene
ENSMUSG00000007594 | Hapln4
Description
hyaluronan and proteoglycan link protein 4 [Source:MGI Symbol;Acc:MGI:2679531]
Coordinates
chr8:72607428-72608439:+
Coord C1 exon
chr8:72607428-72607462
Coord A exon
chr8:72607463-72608318
Coord C2 exon
chr8:72608319-72608439
Length
856 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
AGCAGCTCCTGTACCCGCAGGCG
3' ss Score
7.02
Exon sequences
Seq C1 exon
GCACTGGCCGCTCAGCAAGGGCCACGACCAGGATG
Seq A exon
GTGAGTGCCACGCTGCACTGGTTTTCGAATCTCACATTTGTCTCTGTCTCTCTTCTCTCTGCCTCTCTCCGCCCTCTCTTTTCCTCTTGCCTCCTCTTTCTCTTTCTTTGGCACTTTCCCTTTCTCTGCCTCTTCAATGTCTCCCCCATGTTTGGGGGTGGTGGTGGAGAAGAGCGCTCACTTATTCTTTTTCCGTGTCTCTCCCACTAGTATCTCCTTCCTCTACCTCTGAGTCTCTGCATCTCTGATCCTACACCTCTATTTTTGCGTCTCTGGGTCACTGTCTCTGAGTCTCTGGGTCACTGTCTCTGCGTCTCTATTTATGAGTTTCTATCTCTGCGTCTCTATCTCTGTGTCTCTGCATCTCTGTGTCTCTGAGTGCATCTTTGCGTCTCTGTCTCCGAGTCTCTGGGTCTCTCTCTGTCTTTGCCGCTGTCTCCGGGTGTCTGTCTCTGAGTCTCTATCTCTGAATCTCTTCCTCTGAGTTCCTGTGTCTCTGTCTCTGTCTCTGTGTCTCAACTCTGGGTCTCGCTCCCTCTATCTCTCCTGGCCTGGCTCAGTAGCCCGTTGCCCCCCACCTCTCCAATCCTGTCCCTCTATCCCCAACCCCCGCTCGTGCTGCCGGGCTTGCTGCAGTCTCCTGGCGCGCTGATAACCTTGCGGCCCCGGTCCGCGCTGCTGCTCCCCCTCCCGTGCGCTCCCGTAACGGGGGCAGGGACTTAGGGAAGACGAAAGGAAATCTCCTGACCCTCCGTCAGTTCCACGGTTGATTCGCGCCTGAGACCCTTTTGGGGAGGGCTGGCAGAGCTAGGGGCTGTTGGGGCAGTACAGCTGGAAGCAGCTCCTGTACCCGCAG
Seq C2 exon
GCGTGTGCTCCAGGAGCCCTCGGTCACCGCGCACTCTGGGCCGTGGCCTGGGGACTCCTGCTGCTGGTCCCCGTGCTCGCAGGGGCGCAGCGTGGCAGGAAGAAAGTCGTGCACGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007594-Hapln4:NM_177900:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: