HsaINT0075893 @ hg19
Intron Retention
Gene
ENSG00000019991 | HGF
Description
hepatocyte growth factor (hepapoietin A; scatter factor) [Source:HGNC Symbol;Acc:4893]
Coordinates
chr7:81336606-81339559:-
Coord C1 exon
chr7:81339463-81339559
Coord A exon
chr7:81336681-81339462
Coord C2 exon
chr7:81336606-81336680
Length
2782 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CTCTTTCCTCTTTTTCACAGAAA
3' ss Score
10.17
Exon sequences
Seq C1 exon
ATCCCGTAATATCTTGTGCCAAAACGAAACAATTGCGAGTTGTAAATGGGATTCCAACACGAACAAACATAGGATGGATGGTTAGTTTGAGATACAG
Seq A exon
GTAATTATTAATAGATGCAAGTCATGCATATCCAGAATATGTACAAGAGAGTCCTATTCCCAGAAATATGGACACATGTGGTCCTGAAGGTTGTACCCTCCACAGGGCACCTGGGTGAGGCAGTAAAAGAGGAAGCTGATCACATCTGCTTGCCAGACTGTAAGCTCTGGACTATAATTTGTGCCTCCAGAGGTAGTGCCTTTTTAAATCTTCACAAAGGTCCCATATGTGTTGGCAATGTCCCTGATTCTAAGAGACACTTTGGTTCCGATTAAGCAAAATACGGAGGACCTATTGAAACCTTAATATTACCATAGTAGTTATGATACTTGTTATTAAATTTCCAATCTAGGATATTATGGGTTTATTTTCTAATATGTTTATGCATGATCATGTCAAAACATTTATATTTGTTTTTAATTTCTGACTTTTTCCTTGTCAATCAAATGAAAAATGGTAATTTTAAATTCTAGAGCATTTTATCTTTACAAAAAGGCCAATAGTTAAATAGTCTTGATATTATAATAATCAGTGGGGATACAAAATTCTTGACATGTCTATTTCTCAATGCTCTTAAGAATCAATGACATATTCTACATAAAATCACTTTGCAAATCATATTGTTAGAGAAAATTATGCTTAATAATTATGTCATAAGAATTAAATACTGAAAATATAAGTTAACTTAAAATCTGATCTTACAACTTTCATATACTACATATATTATTCTGTATGTTAATTGGAATGCTAAAATATTTATGTCTTTGGCTATCTCTATCAGAACCTTACCATGCAACACACCCCAAGATACATTGAATTTGAACCACATTGTCTCTTGTTTTCTAGATACCTCACGTTTCTTCCTCTAAGCCTTTATGCTGTTGTTCCCACAACACACTGTGGCTTTCTTCCTCCATGTTTTATGCCTGAAAATTCCTTCTCCTTCAAATTTCAACCTAAATATCCCCTCTTTTAGAATACCCTCCTGTTCCCTTACCGCTAGCCTCCTAGAGTAGAGAAAAAGAATGTCTGTTACTATTATTAAATCACAGTGACATTAGAATAGAGACAACTTGAAACAGAAGTCCTTTTATGAATAAACCAATTATTGGAAAGCAAGAGTTTATATAATTTGATATATATGACTTTAGATGACCACAATGTTGTAGGAGATGGCCTAAAGTTCTTTTTTTAGTATACCCTTTTCTCAAGGAATGGCTTATCAGATTTTATAAATATTTATGCCAATAATTGTAGTATAGCTGTCCTAGGTGTGTAGTACTAAAATAGAATTGTGAAACTAACCAGAATATTAAAGCTGAGTGTGCAGTATGAGGATTTAGTAAAGACTTTAGAATTCTGTTGGAGTGTTTAATTTTCTTAATTATAGAAAATCTTTCAAGAGGCTGGGTGTGGTGGCTCACACCTGTAATCCCAGCAGTTTGGGAGGCTGAGGCAGGTGTATCACTTGAGGTCAGGAGTTCAAGAGCAGCCTGGCCAACGTGGTAAAACCCATCTCTACTAAAAATACAAAAATTAGCCGGGCATGGTGGCACATGCCTGTAATCCCAGCTACTGAGCGAGACTCTGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGGAAGGAAGGAGAAATCTTTCAATAATCCACATTTGAGTTAATTGGTGATTCTTTGCTTATCTTATAACCCCAGAGGATAAAAGAAGACATATATTAATACTTCTAAGTTATTTTTTCCAGTAAGAGAATTCACAAGGATACTGCTTTGGTCATCTCCATTGTTGGAAAAGCAGGTGAAGCTATTTTTCCATCAGATTAGAGTACTGTAAATTTTTAGTTTTTTTCCTTTTTAAATCCAAGTTCTTAGCAACAACAGCTGCTTAGTTATTCTTCCAAAACTCATACTGAAAAGGATAGAAATTAAAAGTCAATATATATTCTTATCCTCCTGTGTGGTAAAGGCCATAAATAACTGTGGTCTCAGTCTGGGAATCTTCTAGTATTACCCTCTGAAGCACTGAACATCTGTACTCTTTGGAAATGTAAATTATGAAAAGTTGTGCTTTTTCCATGTCTCTGCCAAAAAAAATGGATTTACAGATTTTGGATATCATCAAAAAAATGTACTAGTACTCATCATACTCTGCAAATATTTTACAATTTCCTAAATGATTTGCCTTGCAAAATTGTTTTACTTTAGAGATGAAATATTATATTCCTGATCTTATACTGGACAAAGTAATTTATTCAGATTCAGTTACATTTTATGTTAATATATCAAAACTACATAATGGTAGTAGAAGAAGGAAATAGTGCACGAATAAAATTGCTACCACTAGATGGTTTTCAGGGTTCAAACAAGAACTCAACTTTGCATTTTTAATAAGCAAACACTGAATTTAAAATAGATTCACATTTTTAAGAAATTATAATTATCCTATATTTGTAGCACATACGTTCCTCACAAGGATAGATGCACATACACACGAATATGTGTGTTCGGGATGGCTATTGATGTGTAATAACTTTAGACTACACAAAAGTCAAATTGATTTCATAAATTTATAGTCACATTATGAAAAAAAAGCTAACGCTACAATCACCAAATATCACCCTTCAGATAAAAGAACTTCTCATTTTATTCCAGTTGGGTTAATTTCTATATTTTCCTCTGCAGTGTATTTATTTTTAACAAATGGAGCCACAGGCTTTGCATTAATTGGCAGTCACTCTTTCTGCACAGATGTTACTTGTTTCTCTTTCCTCTTTTTCACAG
Seq C2 exon
AAATAAACATATCTGCGGAGGATCATTGATAAAGGAGAGTTGGGTTCTTACTGCACGACAGTGTTTCCCTTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000019991-HGF:NM_000601:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(8.6=57.6)
A:
NA
C2:
PF0008921=Trypsin=FE(11.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)