GgaINT0120892 @ galGal4
Intron Retention
Gene
ENSGALG00000008461 | HGF/SF
Description
hepatocyte growth factor precursor [Source:RefSeq peptide;Acc:NP_001025541]
Coordinates
chr1:10519450-10522480:+
Coord C1 exon
chr1:10519450-10519546
Coord A exon
chr1:10519547-10522405
Coord C2 exon
chr1:10522406-10522480
Length
2859 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TATATTTATTTATTTTACAGGAA
3' ss Score
9.78
Exon sequences
Seq C1 exon
ATACTGTCATTCCTTGTGCTTCAACAAAACATTTGAGAGTTGTAAATGGAATCCCAACACAAACTAACGAAGGATGGGTGGTTAGTTTGACATACAG
Seq A exon
GTAACTATCATTTTGTTAAGAAGGACACACAAAGGATGTTTGTTTTCAAATTGTAGAAAACATTGATTGGAATAAGGATACTTCTAGACTGTAGTTAAATCCTGTAAAGACATTTAAAAGTTAGCAATCCTGGAACATCTGGTGATTCCATCTTGTTACATATTGCTCCACCAGTGAAAAGGTTCTATGTTTATTATTGCTGAGTTACACATATGAGCTTCTAAAGCATCCATACCATTCTGCTCTTTAGATTGGCAACTGCATACTTTTTCACATCATTGGCTCCACATTTAGCCTTAAACTGTTTGTTTTATAGATTGTTATAAGAAAATTGAGTTTCATGTCAGTGTTTACTTTTTAACAGCAGTGCATTTAGGAAAGGATTCATGATATATACCCATATCTAATTTTGCTTTCTGTTCATATCATTGCATGCAATTAAATGGTATTTTGTATTAAAAAATAAGTAGGGGCTTTAAGGAGATCTGTTTCACTCTGTAAAACAAGACCCTAGCATGTACATCTGGAATTGTGTATTACATTATGTCACATCTTAGTTTGCTACCATGTAAAAACCAGAACACAGAATTATTGCCTCTTCTGTTCATAACTCATCAGCTAGAAGTGTGAATTAGTAATGAATAATAGGAAATAGATCTCATCCAATTTTTTTCCTTGTCTATTAGTAGAAAATACAGTGCATGTTATTACTATTAGCTTATGTTTTGTCACTGCTTTAAAAACTGAATTGTAAAGTAGGTATCCACCAATACTCTGGGGAAAAAGAAGACAAAAAAATCTATTTTATGCATTGCTTTACTGATGAAGAAATCCTGGGAGTCGTTACCAGCCATGGTAATGTTTCTAGCTCCTGGGCTCAGATCAGAACTAGAACATTCTAAAAGTTTAGCAGATAGGTGGACAGGAAATAAAAACAAACAGGTGGGCTGGAATGCTGAATCTCTGTGGAAAAGTTTATCTTGCCACTGTTTTTAAAGCAGCTTTAATGTCTGGGGAACATTTTGCCAGGAAAGGGGAATTATATCAGGGTCCCTAAATTTTAAATAGCTAATAAGAGATAATGTTAAGCTAATTGAAAATGGATTTTGTGCTTTACTACAGGATTCTGTGAAGCAGATTAGTGCATAAAAAACTGAAGATTATTTTATGAAAAAGAGATTCCTGAAATACTCCAGCAGGAACATACATTTTCAAGTATTACATTTAGGCATAAAAATGTACTTTCATTGTGTATTGCTACCAAGGAAGCAGATAGACTTTTGTCTGAAACAGTATCTTAATGATTCCATAATTTTTCATGAAGGATTTCAGAGTTTCATAAAAGATACTGTATCCTAACTTTTCTTCTGGAAAACAAACAAACAAACAAAAAAAAAACTATACATCTCAAAATGGAACTGCAATGGCAAATTCTTACTTGTTCTTATAAATTTCTGTTCATACTCGGCAACTTCAGGTCCACTTCTGAATGTTAAATTAATTAATGATATATTTTCCTAATTATCTGATGCAGATTCTGTTATCAGGAATATTTAAATATATTTGGAGAAATTTCATTCATTTCTGTCAGTTCTGGATTTGTGATTTGTTTAAATGAGAGGTTTAACATTCTGTACTAGTCAGTCTTGTGAAGCAAAAGATGAAATCTTGTGAAGTTATATTGGTAAATAGTGAAATGAACAAGCAGGAACACACACTTATAATCCTTTTGTGTGAAATGTTTATAATAAAACTGGGAATCATAGAATCATAGAATCGTATGGGTTGGAAGGGACCTTTAAGATGATTTAGTTCCAACCTCCCTGCTATTGGCAGGGGCACCTCCGTCTAGACCAGGTTGCTTAGAATCATGATTTCATAAAGCCTTTTGGGCTACATAGTTTGTTCCTCAACTAAAATACAACAACAAAAAACACATCACTCCCTCTCCCCCCCCCAAGAAAAACACCCTAAAACAACCACAACCGCAACAACAAAAAAACAACAAAACACAATAAAAGCAGTCAAGTATCTCTGTTATTCTGATTTCTTTCAACTCCGTGTAGAATCTGGGCTCCCTCCAGCATTTCTTGCAAAGTTCTGAATATTTGTTGCCTTGAATTTATAAATTGTGAGATTTTATTTTTTTTTTCACAAATCATCAACAATTGTGATTCATTTTTTAAAGAGCTGTAGAAAATAAATGTGACTTTGGAGGCACAACGAAGGAAACTAATTAATCTGCATTCCACAGTCATATTTATTTCTGAAAGAACTGCCATGCTTAATTGTTTTAATTTTACTTGATATATTATGCTGCAGATTTTCTAAAATCATGTGTAGGATGTCATATATTGCAAATGGTTTCCAACTGAAGTATGTGGGGACAGAAGTCTCATAGGACTGGTAACCAAATAGTAACTCTCCACCTTTGAGGTCAATACTTTGAATAACACCTACTTGAAAAATGTTGTTTACATGTGGTGGCAGTCTGGGGACTTGCTTGAATGTTTTAGTCCAATTGCTATTAAAAAGAGGTTCACTATTTAAGTGTTAATTAACATATCTCTCATTATAAATCCAACACTGAAACCACTAAATGAACAGAGTAACTGAATTTCTCTTTTCTCTTGGCTCATGAAAATTGGAGCAAATCTGCAAGGCTATGCTACCACATGTATTCAAACTGTGGGGCAAAGGAACAGCAAAATGTTTTCACAGGCTGTCATTCAGTCACCTTTCCCTGCACTAGGGGAGTACCTAAATGAAAGCTTGCATCAGTAATCTTTAAAGATTTTGTCTGGGTAGGAAACAAAAAAAATCCTTATTTATGTATGTATATATTTATTTATTTTACAG
Seq C2 exon
GAATAAGCATATCTGTGGAGGTACTCTGGTAAAGGAAGAGTGGGTTCTCACAGCAAGACAGTGTTTCCCATCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008461:ENSGALT00000039793:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(8.5=57.6)
A:
NA
C2:
PF0008921=Trypsin=FE(11.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]