GgaEX0012340 @ galGal4
Exon Skipping
Gene
ENSGALG00000008461 | HGF/SF
Description
hepatocyte growth factor precursor [Source:RefSeq peptide;Acc:NP_001025541]
Coordinates
chr1:10519450-10524027:+
Coord C1 exon
chr1:10519450-10519546
Coord A exon
chr1:10522406-10522480
Coord C2 exon
chr1:10523921-10524027
Length
75 bp
Sequences
Splice sites
3' ss Seq
TATATTTATTTATTTTACAGGAA
3' ss Score
9.78
5' ss Seq
TCGGTACAG
5' ss Score
3.7
Exon sequences
Seq C1 exon
ATACTGTCATTCCTTGTGCTTCAACAAAACATTTGAGAGTTGTAAATGGAATCCCAACACAAACTAACGAAGGATGGGTGGTTAGTTTGACATACAG
Seq A exon
GAATAAGCATATCTGTGGAGGTACTCTGGTAAAGGAAGAGTGGGTTCTCACAGCAAGACAGTGTTTCCCATCTCG
Seq C2 exon
ACCTGCGATATTGACAAATTTTGTAGAAATAATTCGATTGCCCATTTCTGGATGTACCATACCAGAGAAGACCAGTTGCAGTGTTTTTGGATGGGGATACACTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008461_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(8.5=57.6)
A:
PF0008921=Trypsin=FE(11.2=100)
C2:
PF0008921=Trypsin=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCATTCCTTGTGCTTCAACA
R:
CTGCAACTGGTCTTCTCTGGT
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]