DreEX6002391 @ danRer10
Exon Skipping
Gene
ENSDARG00000045544 | hgfa
Description
hepatocyte growth factor a [Source:ZFIN;Acc:ZDB-GENE-041014-2]
Coordinates
chr4:19725074-19730603:-
Coord C1 exon
chr4:19730495-19730603
Coord A exon
chr4:19728689-19728763
Coord C2 exon
chr4:19725074-19725211
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTCTGATTCTCCTCCTGCAGGAA
3' ss Score
10.32
5' ss Seq
CTGGTAATC
5' ss Score
3.45
Exon sequences
Seq C1 exon
GTGGAGGACCAAAACCATCTTGCTTTATACATAAAACCACACGGATTGTTGGGGGAATGCGAGTGCAGCGGGCAGAGGATGGAAGTTGGGTGGTCAGCATTCAGAAAGG
Seq A exon
GAACAGACACTGGTGCGGTGGCTCTCTCATCAGAGAAGAATGGGTTCTCACTGATCAACAGTGCTTCTCCACCTG
Seq C2 exon
CGTTCCTGACCTCTCCGAGTACACCGTGCAGGTGGGGCTTCTTCATCTCAATGCATCCGCCGGCACGCAGGCTCTCCGAATCGCACATGTGGTCTGCGGGCCCGAGGGATCCAACTTGGCCCTGCTCAAACTCACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045544-'13-14,'13-12,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(0.1=0.0),PF0008921=Trypsin=PU(9.5=56.8)
A:
PF0008921=Trypsin=FE(11.3=100)
C2:
PF0008921=Trypsin=FE(20.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGATGGAAGTTGGGTG
R:
GAGTTTGAGCAGGGCCAAGTT
Band lengths:
171-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]