BtaEX6026842 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017664 | HGF
Description
Bos taurus hepatocyte growth factor (hepapoietin A; scatter factor) (HGF), mRNA. [Source:RefSeq mRNA;Acc:NM_001031751]
Coordinates
chr4:39188936-39192487:+
Coord C1 exon
chr4:39188936-39189032
Coord A exon
chr4:39191438-39191512
Coord C2 exon
chr4:39192341-39192487
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCCTCTTTCTTTTAGAAA
3' ss Score
11.07
5' ss Seq
TCGGTAAAG
5' ss Score
6.18
Exon sequences
Seq C1 exon
ATCCAGTAATATCTTGCGCCAAAACAAAACAATTGCGAGTTGTAAATGGAATTCCAACACGAACAAATGTAGGATGGATGGTTAGTTTGAAATACAG
Seq A exon
AAATAAACATATCTGCGGAGGATCATTGATAAAGGAAAGTTGGATTCTTACTGCAAGACAGTGTTTCCCTTCTCG
Seq C2 exon
AAACAAGGACTTGAAAGATTATGAAGCTTGGCTTGGAATTCATGATGTCCATGGGAGAGGAGATGAGAAACGCAAACAGGTTCTAAATGTTACCCAACTGGTATATGGGCCTGAAGGATCAGATCTGGTATTACTGAAGCTTGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017664-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(8.5=57.6)
A:
PF0008921=Trypsin=FE(11.2=100)
C2:
PF0008921=Trypsin=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGCCAAAACAAAACAATTGC
R:
AGAACCTGTTTGCGTTTCTCA
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]