RnoEX6012418 @ rn6
Exon Skipping
Gene
ENSRNOG00000007027 | Hgf
Description
hepatocyte growth factor [Source:RGD Symbol;Acc:2794]
Coordinates
chr4:15440544-15443510:-
Coord C1 exon
chr4:15443414-15443510
Coord A exon
chr4:15441710-15441784
Coord C2 exon
chr4:15440544-15440690
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTACTTTTCTCTTTTCATAGGAA
3' ss Score
11
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
ATCCTGTAATATCCTGTGCCAAAACAAAACAACTGCGAGTTGTAAATGGCATTCCAACACAAACAACAGTAGGGTGGATGGTTAGTTTGAAATACAG
Seq A exon
GAATAAACACATCTGTGGGGGATCATTGATAAAGGAAAGTTGGGTTCTTACTGCAAGGCAATGTTTTCCAGCTAG
Seq C2 exon
AAACAAAGACTTGAAAGACTATGAAGCTTGGCTTGGAATCCATGATGTCCATGAGAGAGGCGAGGAGAAACGCAAACAGATCTTAAACATTTCCCAGCTAGTCTATGGACCTGAAGGCTCAGATTTGGTTTTACTGAAGCTTGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007027-'14-20,'14-18,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(8.5=57.6)
A:
PF0008921=Trypsin=FE(11.2=100)
C2:
PF0008921=Trypsin=FE(21.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATTCCAACACAAACAACA
R:
CCAAATCTGAGCCTTCAGGTCC
Band lengths:
179-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]