HsaINT0075909 @ hg38
Intron Retention
Gene
ENSG00000109758 | HGFAC
Description
HGF activator [Source:HGNC Symbol;Acc:HGNC:4894]
Coordinates
chr4:3447895-3448276:+
Coord C1 exon
chr4:3447895-3448035
Coord A exon
chr4:3448036-3448127
Coord C2 exon
chr4:3448128-3448276
Length
92 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
GAGGGCATTGTGTCCCACAGACG
3' ss Score
5.95
Exon sequences
Seq C1 exon
TCCTGATCCGGCTGAAGAAGAAAGGGGACCGCTGTGCCACACGCTCGCAGTTCGTGCAGCCCATCTGCCTGCCCGAGCCCGGCAGCACCTTCCCCGCAGGACACAAGTGCCAGATTGCGGGCTGGGGCCACTTGGATGAGA
Seq A exon
GTGAGTTGGGAGGGGGGCGCCCAGCGCCCCGCCAGGGTGGACAGTGGCCAGCCACAGTGTGGGTGTCACGCTGAGGGCATTGTGTCCCACAG
Seq C2 exon
ACGTGAGCGGCTACTCCAGCTCCCTGCGGGAGGCCCTGGTCCCCCTGGTCGCCGACCACAAGTGCAGCAGCCCTGAGGTCTACGGCGCCGACATCAGCCCCAACATGCTCTGTGCCGGCTACTTCGACTGCAAGTCCGACGCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109758:ENST00000382774:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(20.1=100)
A:
NA
C2:
PF0008921=Trypsin=FE(20.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACACAAGTGCCAGATTGC
R:
GACTTGCAGTCGAAGTAGCCG
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development