HsaINT0076313 @ hg19
Intron Retention
Gene
ENSG00000095951 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:4920]
Coordinates
chr6:12012724-12015901:+
Coord C1 exon
chr6:12012724-12012799
Coord A exon
chr6:12012800-12015758
Coord C2 exon
chr6:12015759-12015901
Length
2959 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
3' ss Seq
TCCGTTTTTTTCTTTTTCAGCAC
3' ss Score
11.8
Exon sequences
Seq C1 exon
GCGGCCGCCGCCATCAGCAGCGCAGCTCCAGGGCCGGCTGCAGCGGCAGCGGCTCCGCCGGGCGTCCTGGCAGCAG
Seq A exon
GTTCGGCGCGGGCTCCGCGGCGGGGGCGCTGCAGCTGGGGAGGGCGGCGGGGCGGAGGGGGGGGGGGGCAGGAGCACATCCCTTCGGCGGGCGGGGGGCGTGCGGGCGCGCGTGTGTGTGTGTGTGTGCGTGTGTGTGCAACCGCCGACCTTGCAGAGGGGATGGCTGCGTGCGGGAGACCCTTGGCACTTCTGGGCGCCCTCGCCGCGCGCGAGCCGAGCAGGTACAGAGGGACCCAGCCTCCCCAGCCGCCTTCCAGCCGCAGACGCATTTTGCAAGAGGGTGGGGGGTGAAAGAGACCAGGCCTCGGCATCCCAACCTCCCGGCTTTGTGGGTTTCTTTCCCTTTCGTTCTTTGCTCTAAGTGCCTGTTTACTCCCGGCCACCTGGGTAGTTTCTTTCCGGGTTGGGAGTGCGCGCCAGCTGCAGTTGGGAAGGGGGCGGTGGGTTGGGGTGCGGGTCGGCTCGGGCTCGCCTTGGGGTCGGGCTCGGGAAGGAGTTGCTGGCTGGAGAGGGGAGGGGGCGGCGGCGGAGCAGGCGGCGAGGAGGAGTCTCAGGGCTGCCGCGCTCGCCTCATCTCGTCCTCCTCCTCCTCAGCTCTCTGCATCCACTCCAGGCTCCTTCCTGAGCTGGCACTTCCATTCCCCCCCTCCTCCTGGCATGCGAAGCGCTTTGTTCAGTGCAGCGTTGCAGAGGGGTTTTCCCAGGCTCCGCCCTCCACATTCATTCATGTTTTTTCTCCTTGCAACTGTCTTTACGCTTTTTGATCGTGTCATGTTTTTGCTCCATGTAGTATTTATTTCTTTCCCGTAAAGGAACGGTTTATCACTCGTCCTAGTCGCTACAATGCTGCTGTCTTTGGAAATACCCACTTCCCCCCACAAGGATTTAAATATGGGATGGACAGCTAGGGACAGTGGGTAGGCAATGAACGGGGTAGCAGAAAGCCTTTACGGACAGGGAATGTGCATATTTTACATTTATGCTCCGGATCCCATGGGATCACATGATTGGATTACAGTCAGAGTTCACGCTTTAAAAACTTCCAAATATCGTTACCATTTAAAAGCTTTAAGTTTAACAACGAACGTAGTTAAGCATTCATGCAATTTATTTGGTTCAGCTGTGTCTCAATTCTTTATTGAATCAGAACCTTCCTGAATTAGATAGTGGATGTTTCTTTAGAGCAAGGAGCTGAGAAACCCTATCTTTTATAGATCACTTAGCACAATGCTAGATGAAATACTTAGACCATCATTTTTTTTTGTATTATTTTACCATGTAGTTAAAAATTGCAAATAATTTTGTGCTGAGCTGACATACAGCCAGATCAGGGATAAAATACTGAAGTTAATCGTGGCCTTCTTTACCTTCTGTTTCTTTGCTGTAATGAAACCATAAATTTCTAAAACCTTATACTGGGATGTTAGACACATTCCTTCCCATATAGGCTTTCTTAAGGAGAATTAATAGTTCAGCGTTTTTGTGTGACAGGCAAAGCGTCTACAATGTTTAGTTTAGTCCTTATAACAACCTTCTGATGTGGATAATATTTCCTAATTTTACAGTTGGGAAATCTGATCTTCAGAGAGGTTAAGTAACCTGAACAAGGCCACACAGTAAGGGGTAAAGCCTGGCTTTGAACCCACTCCGGTTTGACACCAAGATAAGTCGTCATGACTTGCTGCGCCTCTTGAAAGAAATCCTGAAAGTAGATGTTATCAGCTCCACAAAATAAGCACTGGATATAACTGAGTCATGCAGTACCACATTCTTTAGTTGTTTATCTTGGACAAGTTACTTATCCAATTTTTTTTTAATCTGTAAAATGAATAAATGATAGCTACCTTCTTAGTTAACAGATTAAATTAGGGAATGTGTAGAAAGTACACAGGCACATAGTAGGTGCTCATAAGTGTTCTCTTGTCTTCTACAGTACCACTAATAACAAAAGCTTTAAGCCTTCCTTACTGTTCTATTCTTGTGTCTTTGCTTAATGACTAAACATTGTTTCATGTTTAACAGTGACAGTGGGCTTTGCTTCTCAGTTTTCTTGCAGTAAGTTAAAATTTCAGCTTTAAGATCCTTGAGAATCTTGTGGAAGAGCCTGAGGTGGCTGATTTGGGGAGATAGGTGATTCGGTTTTGGGTCATTCTTATCTTGGCCTATTATATTTCAGATCACTGTGTTTTAAAATCTGTAAGTCAGGACAGGCTAGGTTGTGCTGCAGTAACAAATAACTCTCAAACCTCACTTATTTAAGCAAACAAAAAGGTGTTTCTGGCGTATGCTGTGTGATCACGTGGGTTAGCCAGAGCTGACTTTGTGGTGGTGTCAGATTTGCTGTCTGGAGCAGTGCTGATCCCATGGCAGAGAGAGAAGAGCTCTGGAGGATCATGCTGTGGTAATAACTAAATGCTCCAGCCTGGAAGTGAAGTCTCATCCGCTCACAGGTCGTTAGCTACAGCTCCTCACACGTTCCTGGGAAACACAGGGAAGCAGAAAGTGTGGTCCTACCATGAACCTAGAGGTCTGGAATAACTGGAGTAGCCACAGTAGCAACCCCTTGTATTAACTGAGTTAACTCTAAAACAAGATGAACAAGACATTGTCCCTGCCCCTATGAATGGGCAGATTTACTATACATGCCTAACATAATCCTTTTGTAGCCTGATGCGATACTTTACTTGTTCCTGGTATTGTTGTTTTAAAACACAAAGTGAGTTTTTTTACTCTTGTCTGATAAAGATACGGTGTTTTTTTTCTGTTTTCTTAATGAGAAGTCCCGATACTGACAAAATGACCTCTGTTTAATTAAAAGTTAGTAATCTTTTGCAGTGGTGCCCAGCTTGGTTACTTTTTCTTGAGTTTAGGTTAGTGCTCTGCTAGGCAGTAACTTTTAAAGTATCTTTCTCCTCTGAAGGTAGTAAAATGTGCTTCTCCGTTTTTTTCTTTTTCAG
Seq C2 exon
CACATGGATTAATTGATGTATGTTGAGTTTATGGAGCTGCCTTTTGGTGGCTTGCTTTATCTGCAGTTTTTAAGAAGAAAAAGAAGGCCCTGAGTCAAAGAAGATGCCTCGAACTAAACAAATTCATCCCAGAAATCTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095951-HIVEP1:NM_002114:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.974
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)