HsaINT0076313 @ hg38
Intron Retention
Gene
ENSG00000095951 | HIVEP1
Description
human immunodeficiency virus type I enhancer binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4920]
Coordinates
chr6:12012338-12015668:+
Coord C1 exon
chr6:12012338-12012566
Coord A exon
chr6:12012567-12015525
Coord C2 exon
chr6:12015526-12015668
Length
2959 bp
Sequences
Splice sites
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
3' ss Seq
TCCGTTTTTTTCTTTTTCAGCAC
3' ss Score
11.8
Exon sequences
Seq C1 exon
GCTGCTGGGCGGCGGCAGGGTGGCGGACGGAGCGGGGGACCGGGGAGCGGCGGCCGCCGGAGGAGGTTATGTTTGTGTTTGGGGTTGTCAAGTGAAGGAGGGATCCCAGGCGCCGCCGCCGCCGCCGCGCGGGGGTCGCGGAGATCCCGAGCCGCGGCCGCCGCCATCAGCAGCGCAGCTCCAGGGCCGGCTGCAGCGGCAGCGGCTCCGCCGGGCGTCCTGGCAGCAG
Seq A exon
GTTCGGCGCGGGCTCCGCGGCGGGGGCGCTGCAGCTGGGGAGGGCGGCGGGGCGGAGGGGGGGGGGGGCAGGAGCACATCCCTTCGGCGGGCGGGGGGCGTGCGGGCGCGCGTGTGTGTGTGTGTGTGCGTGTGTGTGCAACCGCCGACCTTGCAGAGGGGATGGCTGCGTGCGGGAGACCCTTGGCACTTCTGGGCGCCCTCGCCGCGCGCGAGCCGAGCAGGTACAGAGGGACCCAGCCTCCCCAGCCGCCTTCCAGCCGCAGACGCATTTTGCAAGAGGGTGGGGGGTGAAAGAGACCAGGCCTCGGCATCCCAACCTCCCGGCTTTGTGGGTTTCTTTCCCTTTCGTTCTTTGCTCTAAGTGCCTGTTTACTCCCGGCCACCTGGGTAGTTTCTTTCCGGGTTGGGAGTGCGCGCCAGCTGCAGTTGGGAAGGGGGCGGTGGGTTGGGGTGCGGGTCGGCTCGGGCTCGCCTTGGGGTCGGGCTCGGGAAGGAGTTGCTGGCTGGAGAGGGGAGGGGGCGGCGGCGGAGCAGGCGGCGAGGAGGAGTCTCAGGGCTGCCGCGCTCGCCTCATCTCGTCCTCCTCCTCCTCAGCTCTCTGCATCCACTCCAGGCTCCTTCCTGAGCTGGCACTTCCATTCCCCCCCTCCTCCTGGCATGCGAAGCGCTTTGTTCAGTGCAGCGTTGCAGAGGGGTTTTCCCAGGCTCCGCCCTCCACATTCATTCATGTTTTTTCTCCTTGCAACTGTCTTTACGCTTTTTGATCGTGTCATGTTTTTGCTCCATGTAGTATTTATTTCTTTCCCGTAAAGGAACGGTTTATCACTCGTCCTAGTCGCTACAATGCTGCTGTCTTTGGAAATACCCACTTCCCCCCACAAGGATTTAAATATGGGATGGACAGCTAGGGACAGTGGGTAGGCAATGAACGGGGTAGCAGAAAGCCTTTACGGACAGGGAATGTGCATATTTTACATTTATGCTCCGGATCCCATGGGATCACATGATTGGATTACAGTCAGAGTTCACGCTTTAAAAACTTCCAAATATCGTTACCATTTAAAAGCTTTAAGTTTAACAACGAACGTAGTTAAGCATTCATGCAATTTATTTGGTTCAGCTGTGTCTCAATTCTTTATTGAATCAGAACCTTCCTGAATTAGATAGTGGATGTTTCTTTAGAGCAAGGAGCTGAGAAACCCTATCTTTTATAGATCACTTAGCACAATGCTAGATGAAATACTTAGACCATCATTTTTTTTTGTATTATTTTACCATGTAGTTAAAAATTGCAAATAATTTTGTGCTGAGCTGACATACAGCCAGATCAGGGATAAAATACTGAAGTTAATCGTGGCCTTCTTTACCTTCTGTTTCTTTGCTGTAATGAAACCATAAATTTCTAAAACCTTATACTGGGATGTTAGACACATTCCTTCCCATATAGGCTTTCTTAAGGAGAATTAATAGTTCAGCGTTTTTGTGTGACAGGCAAAGCGTCTACAATGTTTAGTTTAGTCCTTATAACAACCTTCTGATGTGGATAATATTTCCTAATTTTACAGTTGGGAAATCTGATCTTCAGAGAGGTTAAGTAACCTGAACAAGGCCACACAGTAAGGGGTAAAGCCTGGCTTTGAACCCACTCCGGTTTGACACCAAGATAAGTCGTCATGACTTGCTGCGCCTCTTGAAAGAAATCCTGAAAGTAGATGTTATCAGCTCCACAAAATAAGCACTGGATATAACTGAGTCATGCAGTACCACATTCTTTAGTTGTTTATCTTGGACAAGTTACTTATCCAATTTTTTTTTAATCTGTAAAATGAATAAATGATAGCTACCTTCTTAGTTAACAGATTAAATTAGGGAATGTGTAGAAAGTACACAGGCACATAGTAGGTGCTCATAAGTGTTCTCTTGTCTTCTACAGTACCACTAATAACAAAAGCTTTAAGCCTTCCTTACTGTTCTATTCTTGTGTCTTTGCTTAATGACTAAACATTGTTTCATGTTTAACAGTGACAGTGGGCTTTGCTTCTCAGTTTTCTTGCAGTAAGTTAAAATTTCAGCTTTAAGATCCTTGAGAATCTTGTGGAAGAGCCTGAGGTGGCTGATTTGGGGAGATAGGTGATTCGGTTTTGGGTCATTCTTATCTTGGCCTATTATATTTCAGATCACTGTGTTTTAAAATCTGTAAGTCAGGACAGGCTAGGTTGTGCTGCAGTAACAAATAACTCTCAAACCTCACTTATTTAAGCAAACAAAAAGGTGTTTCTGGCGTATGCTGTGTGATCACGTGGGTTAGCCAGAGCTGACTTTGTGGTGGTGTCAGATTTGCTGTCTGGAGCAGTGCTGATCCCATGGCAGAGAGAGAAGAGCTCTGGAGGATCATGCTGTGGTAATAACTAAATGCTCCAGCCTGGAAGTGAAGTCTCATCCGCTCACAGGTCGTTAGCTACAGCTCCTCACACGTTCCTGGGAAACACAGGGAAGCAGAAAGTGTGGTCCTACCATGAACCTAGAGGTCTGGAATAACTGGAGTAGCCACAGTAGCAACCCCTTGTATTAACTGAGTTAACTCTAAAACAAGATGAACAAGACATTGTCCCTGCCCCTATGAATGGGCAGATTTACTATACATGCCTAACATAATCCTTTTGTAGCCTGATGCGATACTTTACTTGTTCCTGGTATTGTTGTTTTAAAACACAAAGTGAGTTTTTTTACTCTTGTCTGATAAAGATACGGTGTTTTTTTTCTGTTTTCTTAATGAGAAGTCCCGATACTGACAAAATGACCTCTGTTTAATTAAAAGTTAGTAATCTTTTGCAGTGGTGCCCAGCTTGGTTACTTTTTCTTGAGTTTAGGTTAGTGCTCTGCTAGGCAGTAACTTTTAAAGTATCTTTCTCCTCTGAAGGTAGTAAAATGTGCTTCTCCGTTTTTTTCTTTTTCAG
Seq C2 exon
CACATGGATTAATTGATGTATGTTGAGTTTATGGAGCTGCCTTTTGGTGGCTTGCTTTATCTGCAGTTTTTAAGAAGAAAAAGAAGGCCCTGAGTCAAAGAAGATGCCTCGAACTAAACAAATTCATCCCAGAAATCTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095951:ENST00000379388:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.977
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development