HsaINT0077301 @ hg38
Intron Retention
Gene
ENSG00000170689 | HOXB9
Description
homeobox B9 [Source:HGNC Symbol;Acc:HGNC:5120]
Coordinates
chr17:48621159-48626356:-
Coord C1 exon
chr17:48625753-48626356
Coord A exon
chr17:48623136-48625752
Coord C2 exon
chr17:48621159-48623135
Length
2617 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TATCGCTGCTTCTCTTTCAGCCA
3' ss Score
8.96
Exon sequences
Seq C1 exon
ACCGGTCCGGGTGCCACCTCTCCCTGCTTGGGCGCCGCCGCGCGAGCGCTTCCCTTCCCCCTGCAAGCGCCCGGATAATGTCTGAGAATGTCCATTTCTGGGACGCTTAGCAGCTATTATGTCGACTCGATCATAAGTCACGAGAGTGAGGACGCGCCTCCAGCCAAGTTTCCTTCTGGCCAGTACGCGAGCTCGCGGCAGCCGGGCCACGCGGAGCACCTGGAGTTCCCCTCGTGCAGCTTCCAGCCCAAAGCGCCGGTGTTCGGCGCCTCCTGGGCGCCGCTGAGCCCGCACGCGTCCGGGAGCCTGCCGTCCGTCTACCACCCTTACATCCAGCCCCAGGGCGTCCCGCCGGCCGAGAGCAGGTACCTCCGCACCTGGCTGGAGCCGGCGCCGCGCGGCGAAGCGGCCCCGGGGCAGGGCCAGGCGGCGGTGAAGGCGGAGCCGCTGCTGGGCGCGCCTGGGGAGCTGCTCAAACAGGGCACGCCCGAGTACAGTTTGGAAACTTCGGCGGGCAGGGAGGCCGTGCTGTCTAATCAAAGACCCGGCTACGGGGACAATAAAATTTGCGAAGGAAGCGAGGACAAAGAGAGGCCGGATCAAA
Seq A exon
GTAAGTTATAAAAAGTGAGGAAATACCCAGGCCGAAGGCCAGGAGGGGGGCGGGGAGGGGAAAGGCAATAAACTGCGGACAATGTGAAGGGAAACTGCGGCGGTGGCCGGAGAGCGGGCCGGGAGGAGGAGGGGAGAGGAAGGAAAGACGGAGGGAAGGGGAAAGCTGCGTGCTCTAGAAGGGGAGACTGAGGCCGCCAGAGGAGCGCTGCCCCCACTTCTCCAAGTCCTGCGGGGAACAGGGGCTCGGGGATCGACTTGCAGCTCTCTCGGCCCTCTTTCCCCCTCTCTCCCGGAGGCCCCAGCTGAAAGCCCGGCCAGAGACCGGCGACGGCCGGGAGAGGAGCTGGCGGGGGCCGGGGCCAGCGGCCAGCGAGGCCGAGAGCCGGCGAGGGCAAGGGCCGGAGCGCACTGGGCTGCCCGGGGCCGTGCGGCTGGCAGAGCTCCCCGCGCCACGCGCAGACCGTAAAAGCCGGCCAAGGGGAAGGGGGAGGGAGCTCATTAGGATTTTATTTGCGATGCAACAGCTTGGCGGAGGATTGTTCCTAGCAGATCTCGCGCTGTAGCCGCGCAGAGTCCGCAACCGGCGACAGGAGGGGCGGGGGAAGCCCAGGACGCGGTGACTGAGCCCCCTCCCCGGATGCGCCGGCCCCTCCCCGGGAGCCTTCCCTCCGGTGGCCCCTCTCCTCCTCGGCGTCCTCGCAGGGGCTACCGCTTCCTTTTCTGCGGTCCCCCGCTGCTCTCTGCGGGGCTCCCGAGCCCCAGCCCGGGCTGTCCGCCTCTTGGGGAGTCGGGGAATCGCTTCCGAATATCGGGGCATCTCGAAGGGACCCCGGGGAGAGGAGGGGTGGGGGGAAGAGAGAGTTGCAGAGAGGCGGAGAACTTTACCCTTTGTGGGTAGTTTCCCGTCACCTCCCACTCCTCAAAAGCACCCCGGCCAGAACGCCAAGTCTGGCTGATTTTCAGGAGGTGCTACTAGATGAGAAGAGAGGGTTCTCCTATTATTTATTTTTAAGGTTGAGAAGGGCTCATCGGTGAGGGAACTCAGCCTCAAACAATGACTCGCAGGCTGGTGGATCAGGTCCTCGTTTCTTACTCTTTTTGGGAAGTAGGGATGTTTTAGTCTCTCCTTGCCCTGCTAGATTTCCCATTGACGGAGTGGCCCCAGGGCCCTTTAGAGCATCCTTGCCTGCTGGAGAGTAAAGAGCAGCCCCATTCCTTGCAGGGTCCTGTCACCTCCAACCTGCCAGGTGGAATCCTAAGAGCTGGCATTTAGGGAACACATTCTTCCCCAACCCTCCCCGCACACTCCCAAACAGATCCCCCACCCTAAACCCCCAAATTCTGCCTGAAAAGCCCATTATGGCAAGGCAGCCATTTGGCTAGGATCAATTATTAACAGTTTTTTCCCTCTTTCATATTTAATGCGGCTGCGGGTCCCATCCCAGGCAATCACATTAAGGAAATAGCGCTGCAAATTGGTAAGACACGGTACTTAGTGTAGGATGAACCAAATTTTTTATATAAAAAAATCCAGTGTTTTTCACTTGGGGAGAAGGAAGCTAGTAGCTGGTGGCTGTTATTTTTAATTGGCTTAGCTTTATTTGGCAACTTTTTTGAGTTCCAGAGTAGGGGGAGAGAAGGTAAGAAGAGAAGCCTGTATATATTTTTGTTTCCTCTCTTCCACTCGGTTACCCTCTTCTCCCCTCCAGCCCCCACATAGGATCAATTAAGGCTAGGTGTGCTGTGAAGGGCTTCCTTTTACCTCCACATCACCCCTGGCTCCCCACCTTGGGACTGGAGCAATTTTATTCCCTAATTTCCCTGCACTTGCGTTAACCAAACTGTGAGCTGAGCAGGAGCTGAAAAGGAGAGAGACTATTGCAACCATAAGTTATCTGTGAGCCCCCAGTGCTCCCCTGTCCATAAGCTGGAGTTGATAAATGGTTGCAATTGCATTGCGTGTGAATTGGAGTGTGCTGGCTGTTTGTGGCTCTAAGTGCAGACCCATATTCGTGGTGTGTGGTGGTGGCAGGGGGGGAGATTTCTACGCAGACACACATGCCTGCTGCCATGTGGTCTAGAGACACAAGCTTGTTTGTGATCAAGGCAGGGGATATTGGGACTGGACTGAAGGGCTGAGAGGTCTCTTGGGGTGAAGTGACACCCCAAATGCAGTGACTGAACAGACATCTCACTTCCCCACCCAACTCCTCCTCTCACCTCCTAGAGCCAGGACCCTTCAGGTCAGCCACCCACCCCTAGTCAGCCTGGGAGTGCTGCTGGTGGGACTTCAACCATGCTGAACTCTGACCTGAGTCCTAAGCAGTTTGGACCCAAGTAGAGAAAAATTGAGAGGGAACTTGATGTAGGCAGAGCTTTGGAAGTGCTGAGGAAGCCTGGGCCCACGTTTGGCTCCATCCTTTCCACACAGCCTCTCACCTGGAGGTGTCTATAGCAATGGCTGGCCCATCTGTGACACCCTTCCTGGGAGCTTGAAGACCCAGGTGGCCTCTTCTCCAGTGCAAGATGGGGAGTGGAGACCAAGGGAGTGCCCTCTTGATCTGGGGCCCTTCACCCCCTTCCTTTCTTTGATTCTATCGCTGCTTCTCTTTCAG
Seq C2 exon
CCAACCCCTCCGCCAACTGGCTGCACGCTCGCTCTTCCCGGAAAAAGCGCTGTCCCTACACCAAATACCAGACGCTGGAGCTAGAGAAGGAGTTTCTGTTCAATATGTACCTCACCAGGGACCGTAGGCACGAAGTGGCCAGACTCCTCAATCTGAGTGAGAGACAAGTCAAAATCTGGTTTCAGAACCGGCGGATGAAAATGAAGAAAATGAATAAGGAGCAGGGCAAAGAGTAAAGATTAAAGATTACCCCCAGTCCTCCCTAGCTCTTCCCCATCTCACTCTTAGTTATGTGACGACTGCAAAGCCAGTGCTGTCTGGGATGTATTCAAGTGAATGGGGAAGGGAGTCTCTCTTCCAAGTCCTTTATCTGCACCTAGAACCTCCCTCCTTTCCTTTGCCCTTACCTGTCTCTCTCTTCTCTCTAGGTGTCAGGAGAAAGTTTTGTTGATTTAGAAGATAGAAATAGTTGGTTCCTAAGAATGTGATGGGCCACAAGGAAAGAGAGACCCCAGTCAAGCTCCTAGTATGCCCTGTAATTTTTCTGGGAAGTCCTAGCCCCTCACTTCCAGCTTGCCTGTTTCTTCTCTACACCCACCCAAAAGTCACCCAGGGACACTCCAACTCTACACAGCTCAGCAGACATCCACACACAGTAATGGGGTGAGCTCACAACCACCATTCAGTCAAGTGAGGTGACACTCCAGTTGCAGACCATCGCACACCAAATTTGGCAAAACAGCCCTCAGACTGTCAGGCAAGCCCGGGTTCTACCCCTAATGCAAATACCCACCAGGGAGATGTCTAGAGGCAGACTCCTGAGTGAGGTGTTGCAGCCCAAAGGCTGCAGCATTGCCATACCATTCCCATGGAGTTGCCAACTATTCTCAGGCCAAGGGCCATGGGGAAGATGGAGCAAACCTAGCCCCCAAGCCGGTGGGCTAGAAAGTACAAGAAAAGGCAGCACGTGGTTTTATGAAGCTATCTTAGGTGGAGCTACTCCCCACCTCCCACCAACATATACATTTTGTTGCAGGAAATGTTTAATTCCGCATGATGTTTCCCTCTCCTTCCAACAAAAGAAGGTCAAACTGTGGGTCGTAGAGCCTTGACAATGTTGTCCTCCTGTTCATCTGTGCACCACTTGACAGACTGTAGCTTCTCTTGCTCTCGACCGGCCCTGCATTCTTCCGCACCCTCCCTAGCTCTGAAATCAACTCTCTTCGGTCGTATCCACCTTGCACCCGCAAGTCAAGCCGCCCCTTGTAGAAAAATCCCTCCACCTTCCGTTCCCCGCTAGGTCAACCCCACTGTAGACAGGAAAGCCAGGCCAGGAGAGTCCGAATGAGAATTTATTGTGAATCGATTCCCAAGCTCCCTTCCGGGACAAGTGGTCTGGGACAGGGAGGAGCAACGGCCCCAGCGCGCAACGCTCTGCGCGTTCCTCCGAATCCCGTCGGCTTCTCGACCCACGCAGAGAAGCCCCGGGCTTGGCGGCTCTAGCCCCAGCGCCAAAGGAGACCCGCCCCAGGGCCGGGCTTGGCCTCCTGCTTCATGGGCCTGGATGCAGATCTGCGTGGCTGGTGCGTGCGCGCGCTTCTGGGAAACAGTCCCGCGTGCAAAGGAAAGGGGCAAAATGGCACCTAAGCATCAGATGGAAGCTTACTCTCTGCTTCCGTTCCTCCCCCTGCTCCCCTACTTCTCAGTCCCCTTCAATTTGTAGACTCTTGCTCCTGCTTCTCCTGATCCTGCAAGGGGACATTCCAGTAGAAGTTTTTTGCTTTGTCGGTGGCTGTCGTGAAATTGTGCTTGTGTTTCGTGATTTCTTTGGGGGTGATTGTCTCGCTTGTTTTCAGTTGTCGATTATATGGGAGGGTTCTGGGTGGGAGTGGGGAGGGCGAGGGGCCTAGAGCTCTAATTGTTTGTTTTGGAAGAAAAAAAGAAAAAGAACAAAAAATATATATCACTCTAGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170689:ENST00000311177:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.682 A=NA C2=0.308
Domain overlap (PFAM):
C1:
PF046178=Hox9_act=WD(100=99.4)
A:
NA
C2:
PF0004624=Homeobox=WD(100=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development