HsaINT0077904 @ hg19
Intron Retention
Gene
ENSG00000187522 | HSPA14
Description
heat shock 70kDa protein 14 [Source:HGNC Symbol;Acc:29526]
Coordinates
chr10:14894369-14896279:+
Coord C1 exon
chr10:14894369-14894530
Coord A exon
chr10:14894531-14896123
Coord C2 exon
chr10:14896124-14896279
Length
1593 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AGGCTATGTTTTTAATTTAGATC
3' ss Score
6.3
Exon sequences
Seq C1 exon
CAATATTTTGGTGTTTAAGCTTGGAGGAACATCCTTATCTCTCAGCGTCATGGAAGTTAACAGTGGAATATATCGGGTTCTTTCAACAAACACTGATGATAACATCGGTGGTGCACATTTCACAGAAACCTTAGCACAGTATCTAGCTTCTGAGTTCCAAAG
Seq A exon
GTGAGTGTTAATGGCCTGAATAATACCTTCTGATTGAGGTTTTCCTTCACATATTTTAATTTTTTTTCCTAATTTATTTTAAGTTATCCTGCTGCAAAGGAGGATGTGGTTTTTTCATTGCTTGGAAACTGGATATTTTCATATCTAGAGTTATGTCCTGTCCAGGCAATTCAAAGAAGCAGAGGCCAGGCTGCCTAGTGCAGTGTGCTTGGATTTTTCACTTAGTGTAAAGAGACCGTCAGATACTGAACTGCATGAACGTAGATTTTAATTCTTCATGTAGTGCTCTTCTGTCTGGTTAAAGGAGTGTATAGGCACTGAGGCTTCATTGCCTTCTGAACAGTTTTTAAAAGTTTGGCTCTGGTGAAGATTGCATTATGTTATCTTCATATTCCAGTGAGTTATTGTCTTATGGAATATTTATCTTAATTACTCATCTGCTGCTAGGAATATTTCAGTCTTGTTACTGGATATAATTACTCTAAAATTCTAACCCTTTTGGATGTTACAAAAGTCAGATATGTAAAGGTTATACTTTGGGTACTGCTGCTCTAAAAAAAAAAAAAAGTGTAATTGAAATGGTATTTTAGCCAGTTTGACTAACCTAATTGGTTGAAGAAGTCTTGAAAAAGTCATAATGTCTCACTTGTTTGATAAAGACCTATACTGCTTTTTGTTACAAAGATGTTGTTTAAATGAAGTCATTGATCACTACTTAGTAAGTAGTTTTAAACATGAACTCATATTGGAGATAGTGGAATGTAATTTTACATATTTTGTTGTATGTGTCAAATTTTTTTGAAGAAACACTTGTAGGTTGTTTTTTCTTTTTAATGCTTGACAAATAATTTTATGCCATTAAACAGTGATTGTGCTGTGATTATAAAGGGTAAAATAGGAGACTTTGACGCTCTTACATAAATCTCCTTATCTCCTTTAACCTCTGTGTCTCACCTGGAAAAGGGTGATATCTACTCTACTTTCTTCAGAGTACAGTCTATTATTACAATTATATAATGCAGCAGTTCATGGTTACATAATGTAGCAATTCAGAGTATTAAGGAAATTGGTAATTCATTTTTCTTGAGGTGACCCCTTTAATTGCACAGAGTGTTTTAGGAAAGTTTAGAGGGATTAGAAGAGAAATACTAAAATCCGGAATAAAATATTGTTTCACTAATTTATTTTATTTATTTATTTATTTTGAGACAGAGTTTTGCTCTTGTCGCCCAGGTTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAATCTCCACCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGCATGCACCACCACACCCAGCTAATTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCCTGGTTGATCTTGAACTCCTGACCTCAGGTGATCTACCCATCTCAGCCTCCCAAAGTTGGGATTACACGCGTGAGCCACCGCACCCGGCCTGATTCACTAATTTATTATTGTTTTAATAAGGATTATCCAGATCTTAGTTACAATATTGTAAATGGCCCAGTAATTTTAAACCCCAAAGGCTATGTTTTTAATTTAG
Seq C2 exon
ATCCTTCAAACATGATGTGAGAGGAAATGCGCGAGCCATGATGAAATTAACGAACAGTGCTGAAGTAGCGAAACATTCTTTGTCAACCTTGGGAAGTGCCAACTGTTTTCTTGACTCATTATATGAAGGTCAAGATTTTGATTGCAATGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187522-HSPA14:NM_016299:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(10.7=100)
A:
NA
C2:
PF0001215=HSP70=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATATTTTGGTGTTTAAGCTTGGAG
R:
CTGGACACATTGCAATCAAAATCT
Band lengths:
318-1911
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)