MmuINT0079340 @ mm9
Intron Retention
Gene
ENSMUSG00000079615 | Hspa14
Description
heat shock protein 14 [Source:MGI Symbol;Acc:MGI:1354164]
Coordinates
chr2:3413836-3415455:-
Coord C1 exon
chr2:3415294-3415455
Coord A exon
chr2:3413992-3415293
Coord C2 exon
chr2:3413836-3413991
Length
1302 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
TTAAAATGTTCTGTTTTTAGGTT
3' ss Score
11.37
Exon sequences
Seq C1 exon
CAATGTTTTGGTGTTTAAGCTTGGAGGAACGTCCTTATCGCTCAGTGTCATGGAAGTTAACAGTGGGATGTATCGGGTCCTTTCCACAAACACCAGTGACAACATAGGGGGCGCACATTTCACAGACACCTTAGCACAGTACCTGGCTTCGGAGTTCCAGAG
Seq A exon
GTGAGTATCCAGTCCAGTTTGATCAAGATTTCACTTCAAGGGTTTCTTCCTTGGTTTATTTTGACAATTTAAACTTGTCCTTTTATTTATTTTTTTTCTTTTCCTTTTCTTTGTTTAAGATTTCTGTGGCTGGGGAGGTAGCTCAGCCTCTTATAGAGTGTACTGGCTGGTTTTGTGTCAACTTGACACAAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTGGGGCATTTTCTCAATTAGTGATCAAGGGGGAAGGGCCCCTTGTGGGTGGTGCCATCTCTGGGCTGATAGTCTTTGGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTACTTCCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTATGGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGTTTGTACAGGAATAGAAACCCTGACTAAGACATAGAGGAACTGAACTCAGTTCTGACACTTTTAACAGCTGAGCCTTCTCTTTAGTCCCAGTGTATTGAGCTGTTCTGAGACACAGGAAGATGTGTTTCTCTTGTGGAAGCCAGGTGTCTTCATCTGTAAATTATAGTGTCCTCAGAAGTAGAGGCTGTGCCAGCGGTGCGCCTTTTAAGCCAGGCATGGCGGTGACATTTGTAGCCTCAGTACCTGCAAGGCACGGCAGAGGACACTCGGGGACACTCAAGTTGAGGACAGCTTGATTTTTAATTTTTAAAGGGTGATTTCCCACGTGGAATAAAAATGTGCTGCTTTTTATTATAAAGGTATTGCTTAACAAAACAGTTGGTCATTACTTAAAGTAACCCACACTGCAGATGAGAGACTTTAATTTTACACATTTTTGGGGGTGTGAGGAACCACCACGAGCTCAGCAGTGTTAGCACCGAGCTCCCACTGCACACAGTGTGTGTGGTGACCCATCATCTCTGGTCTGATTGGCTTGTCTGCTATAGACTCTCAGACCAAAGACCAGGGTCTCATGGTTACTTAGAAAAGCCATTCAAAGTAGTGTAAAAACACTTTTTCCCTGGAAGGACCCAGGCAATATGGGTAGAAAAGTTTAACAGCATTGAAGCCATGTTGCTACTTCTTGATTATTATTGCCATAATGGTGTTTAGAATTTGGTGACATTACATTGTAAATGCCCTAGGACCTTTAAACTTAAAATGTTCTGTTTTTAG
Seq C2 exon
GTTGTTCAAACATGATGTGAGAGGAAATGCCCGAGCCATGATGAAATTGATGAACAGCGCTGAAGTGGCCAAGCATTCTCTGTCAACCTTGGGAAGTGCCAACTGCTTTGTAGATTCCTTGTATGAAGGTCAAGACTTTGATTGCAATGTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079615-Hspa14:NM_015765:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGTTTTGGTGTTTAAGCTTGGA
R:
CTGGACACATTGCAATCAAAGTCT
Band lengths:
318-1620
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: