HsaINT0082529 @ hg38
Intron Retention
Gene
ENSG00000135424 | ITGA7
Description
integrin subunit alpha 7 [Source:HGNC Symbol;Acc:HGNC:6143]
Coordinates
chr12:55694778-55695637:-
Coord C1 exon
chr12:55695522-55695637
Coord A exon
chr12:55694971-55695521
Coord C2 exon
chr12:55694778-55694970
Length
551 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGG
5' ss Score
5.25
3' ss Seq
AGTGGGGTCTGACTCTCCAGGGA
3' ss Score
5.33
Exon sequences
Seq C1 exon
ATCCACTTCCTGAAGCAAGGCTGTGGTGAAGACAAGATCTGCCAGAGCAATCTGCAGCTGGTCCGCGCCCGCTTCTGTACCCGGGTCAGCGACACGGAATTCCAACCTCTGCCCAT
Seq A exon
GTGAGGGGGGCAGAGAGCAGGGTGGGGGTGGGAGGGCAAGAGTTCAAGGATTGAGAGAAAGCCCTCTCAGGAGGACCAGTCAGAGGGAAGGGCTGAGCCTGCAGAAAAGGCAGAAGGTGGAAGAGGACCTGCCGATGGACTTGGAGACTGAGATGAGGGTCAGTGATGGGGCCACGGGGGCTCCCATGGCAAGGAATAGCAATCCTTCACAGTACACTAATAATATGCAGTCTACATACATCTCATTGGTTAGTCTTCAAACCTCTGTGAGGTAGGAATTATATTAGTCTCATTTTATAGATGGAGAACTGAAGCCTAGAGAGGTTAAGTTACTTGGCCAAGGTAAGTAATGGTGGAGCTGAGATGAGAACGGAGGTCCCCTGACTCCCAGTCGTGTGTACAGAGGCCTGAGGCTTGGACGGGTGTGATGGGGACCTGGGGTGGGAAGAGAGGCTCAGGGAGTGAAGGCAGGTACTGGGGGAGCAGACTGGGCGGGGGAATGGTAGGGGGAGGTGTTCAGAACTTAGCAGGAGTGGGGTCTGACTCTCCAG
Seq C2 exon
GGATGTGGATGGAACAACAGCCCTGTTTGCACTGAGTGGGCAGCCAGTCATTGGCCTGGAGCTGATGGTCACCAACCTGCCATCGGACCCAGCCCAGCCCCAGGCTGATGGGGATGATGCCCATGAAGCCCAGCTCCTGGTCATGCTTCCTGACTCACTGCACTACTCAGGGGTCCGGGCCCTGGACCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135424:ENST00000257879:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.246
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(38.8=100)
A:
NA
C2:
PF084417=Integrin_alpha2=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACTTCCTGAAGCAAGGC
R:
CCCGGACCCCTGAGTAGTG
Band lengths:
295-846
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development