MmuINT0083799 @ mm9
Intron Retention
Gene
ENSMUSG00000025348 | Itga7
Description
integrin alpha 7 [Source:MGI Symbol;Acc:MGI:102700]
Coordinates
chr10:128383343-128384047:+
Coord C1 exon
chr10:128383343-128383458
Coord A exon
chr10:128383459-128383854
Coord C2 exon
chr10:128383855-128384047
Length
396 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
AGTTGGGTTCCGTCTTCCAGGGA
3' ss Score
7.85
Exon sequences
Seq C1 exon
ATCCACTTTCTGAAGCAAGGCTGCGGTGAAGATAAGATCTGTCAGAGCAACCTCCAGCTCGAGCGGTACCAGTTCTGTTCCAGGATCAGCGACACAGAGTTCCAGGCTCTGCCCAT
Seq A exon
GTAAGAAGGATGGAGAGGGCGTTTGTAGAGGAGGAGAGGGGAGGGGCCAGGGTTCAGAGTGGTCAGGCAGAGGCCCTGACCCGGAAGAGATAATGATTCTCCTAGTCTGGATAATGCCTTGTGTTTTGTGGACACTTTGTTACACTCCTTTGTGAGGCAGGGCTGGCTGGCTCGGTGTTAAGAACTGGGAGCAGAGGCCCAGAGATCTTGCTGTTTACACAAGGTCAGAAAGTGGTGGAGTTAGGGTAAGGATGGAGGTGCACAGAAAGAGCTGGCTTGAGACTTGTGGGATCTGGAGTGGGAGGAGAGGCAGTGTGTATTTGACTGGAGACTGGGAAGAGAGAGGTCACTGGTGAGAGGCTCAGACTCTATAGTAAGTTGGGTTCCGTCTTCCAG
Seq C2 exon
GGATCTGGATGGAAGGACCGCCCTGTTCGCATTGAGTGGGCAGCCGTTCATAGGCCTGGAACTGACAGTCACCAACCTGCCCTCTGACCCTGCCCGGCCTCAGGCAGATGGGGATGATGCTCATGAAGCACAGCTCTTGGTCACTCTCCCAGCCTCTCTACGGTACTCAGGAGTCCGTGCTCTGGACTCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025348-Itga7:NM_008398:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.231
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(7.7=100)
A:
NA
C2:
PF084417=Integrin_alpha2=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTTTCTGAAGCAAGGCTG
R:
AGAGTCCAGAGCACGGACTC
Band lengths:
305-701
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: