HsaINT0084368 @ hg38
Intron Retention
Gene
ENSG00000173826 | KCNH6
Description
potassium voltage-gated channel subfamily H member 6 [Source:HGNC Symbol;Acc:HGNC:18862]
Coordinates
chr17:63538410-63542434:+
Coord C1 exon
chr17:63538410-63538662
Coord A exon
chr17:63538663-63542240
Coord C2 exon
chr17:63542241-63542434
Length
3578 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGT
5' ss Score
5.56
3' ss Seq
CCCACCCCTCTGGCTGGCAGGAA
3' ss Score
6.67
Exon sequences
Seq C1 exon
GTGCTGAAGGGCTTCCCCGAGTGCCTGCAGGCTGACATCTGCCTGCACCTGCACCGCGCACTGCTGCAGCACTGCCCAGCTTTCAGCGGCGCCGGCAAGGGCTGCCTGCGCGCGCTAGCCGTCAAGTTCAAGACCACCCACGCGCCGCCTGGGGACACGCTGGTGCACCTCGGCGACGTGCTCTCCACCCTCTACTTCATCTCCCGAGGCTCCATCGAGATCCTGCGCGACGACGTGGTCGTGGCCATCCTAG
Seq A exon
GTGGGTCCGGCGGAGTGGACCAGGCCTGTGTTGGGGATTGGATGGAAGAGGGCGGGATTGGAGATGCCCTGCCCAGGCCACCCTCTTCCTGATGAGGATTTTACTTTTACTGGCAGCCACTTGCACAGCATGTGCCCGGGAGAGCTTTAGACCCAGCTGGCTGAATCCTTAAAACAACCCTCTGCCGGAGGTCCCATTTTCCTGAGAGGGAAGTTGAGGCTGAGGGAGATCATGCTAGTCTGTGGCCAGGCAGGGATTCCAGGGCTGCCAGTGTGACTCAGAAGCCCAGGCAGGTCTTCCTACCTTCTTGCACTCTTGGGGAGTTTAGGGAGAAAGGCCAAGGGTCTTTCTGGGTGGAGGTGGATGCCCTGGCTGGGGACCCCAGTCTCATTCAGTGCAGACACAGGGATAGCTAGACACTTTGGAGGAAGGACATGAGCACTGGGCAGGGGGGACAGACAGGTCACAAGCAGCCTCTGTCACATACCTGCTGTGTGACCTTGGGCAAGTCACTTTGCCTCTCTGAGCATCACAGGGTCCTCTTGATTCTCATCTTCCTTGCCTGCCCCATGACTTCATCTCCACCCCAACTTCAGCCTCGCCCTCCTTTGGTACCCATGACCTGGCTATCCTCCAGCCCCTCTGGACAGGTTCCCCTCGGGCAGCCCTCCCCCTCTGCTTCCTCTGGACTGCTGGTGATCTGCTCTCCTCGCCCCTCCTCACCTGACACCCTCCCCTGGGCCTGCTCCTCGCTCCCACGGCTTCAGCCTTCACCTGTGCCACAAGGAGCCCTGTCCTCACCCCACTGTCTCCTTAGACCAGAATATTCCATTTCTTCCTGGGCATGGCCGCCCTAGTATTCTATGAACAGATCAAACTCAATGTATCCCAACCTGAAATCACCTTTCCTCAAAACCAGCTGCTTCAGCATCCCCATCACTGTGAAGCATCTGCCTATTGCCCACGCCACAGTCTGCCAAGGGGGCATCCTACTTCATTCCTGCCCACTGTCCACCAGCCAGACTTGTCCATACCTCTCCATCTCACACCTGTCTCCCTGTCCCTGCCTGGATCCAGCCCTCTTTGGGTCCTTCCTGGAAAGGTGTTGGGAACTCCTTTCCCATGGCCCTGCGTCTGGTTTACTCCCATGCCTGTCTTCCACCTTCTGCCAGTGACCTGAAATAGACATCTGTACATCTGCCTCTTCTGCTCAAGATCCCTCCACAGTTCCCCATGGTCCATGCATGGCATCCCCAGTTATCCCAATCCGACCACCCTGTCCTACCACCCTCCCCCTGGTACTTCATGCTCCAGCCAAACTACTTAGAGTTCTCTAAATCTGTGCCCTTGCATGTGCTGCCATTCTGCCTGGAGCGCCCTACCCTGTGCCAGTCCGGCAGATCCCAGTTGTCCTCCAAGGCTGGGCTTAGGCACAGGTTTCTGTATGAGACCTTCCCTCACTCCCAGCCTACCTTAGACGTGCCATCCATGGCCAGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGTGATCACAAGGTCAGGAGTTCAAGACCAACCTGGCCAAGATGATGAAACCCCATCCCTACTAGAAATACAAAAAATTAGCCCGGCATGGTGGCGGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAGAATTGCTTGAACCCAGGAGGTGGAAATTGCAGTAAACCAAGATCACGCCACTGTACTCCAGCCTGGGTGGCAGAGCGAGACTCTGTCTTTAAAAAAAAAAAGTGCCATCACATGGGAGGGATGATTATTATTATTAATAATTAAGAAGTTAATCCAATTTAAGTTTCAGTTAGAGACATGAAACCTCTCATTTTGTCCTGAGTAGAAAAAGACACTAGATCAGAATCTTTCATCTACTGGAAAACCATCACATTATAATGTTGCCCAGATTTCAAGCTTCAGGGTTTCATGTGTGACCCTGGCAAGCCGCTTCCCTCTCCAGGCCTCAGCCCCCTCCTTTGTGAATACCCTTTGATCCTGTTCTCTTGTGGGGACATGTCTCAGCCTCCACCCATCCTTCTGTGCTAAACTGTTACTGCCACTTGCACTAACAAGTGGACTTTCTGGGGGAGTGGGAATCAAAGCAGTCATGCTCCGTGGCACCCCGGCCCTGGGCTCTCCACCCCTGAGCCCTGACAGTGCAGTGCTGATCACATGCTGTTTCTTCTGTCCTGACTGCCTTTCTCATGGGGGCTGGTCCTTGTTTCTCTCGACACAGCCCCCACTTCACTTCCTCTGTAAGCCCCCTCCTCTCTGCCCCAGCCACCCCTGGCAGGAGGAGCCCCTCCCTCCTCCATGGCCCCATAACTCTTGGTTCTTCCTGTTTCTAGGGCTCTACAGATCATGCTGTAAACTTGTTGGCTGCTTACGTACCTATCTTGCAGGGATTTGGGAGGGTCCTTGTGGGTGGCACAACATCTTATATTTATATCCTTTGGCCAGCACAGCACCTGGCACCAGGAGGGCCCAGTACCCTTGCCACATACCACATACCTGAACATCACCCATGTCTACCCTGGGATATTCCCCCTTGCCTTGCATGGACCTAGTCAGGTGCCTCTTGCTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCACCCAGGCTGGAGTACAGTGGTGTGATCTCAGCTCCCTGCAAACTCTGCCTCCCGGGTTCAAGTGATTCTTCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCCACCATGCCCTGCTAATTTTTGTTTTTGCTGTTGTTGTTTTTAGTAGAGATGCGGTTTCACCGTGTTGGCCAGACTGGTCTCGAACCGACCTCAAATAATCCACTACCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCGCTGAGCCCTGCTGCCTGTTGCTTTTTGAGTCACTTTCTCAAGCATCACCTCATCTGCTTCCCTGAACAGTCCAGTGGGGTTGGCAAGGCAGATCAGGTTTTATCCATTTTAGAGATGAAGACTCTGGGGTCTAGACAGGGGGAGTAACTTCCCCAAGCTTCCTTCACCAGGGCCATGCTGGTTACCTGGCCCCACAATTGGGAGTGGGAAGACAGAGAAGCCTCTGGCCCTGCCCTGGCGGAGTTAGGTGCTCTGGCCCTGGGTTCCCTGCACCCTGCTCCACAGCACTGGCAGGCCAAGCAGCAGGAAGACGTTGAGACAGATGTTGAGCCTTTAGGGCCCCTTCCTGCCCACTGTGCCAAAGAGTATGGGCTACAGGAGGGAGATTCTGATGGAGGGTGGTTCTGAAGGGCCTGGAGACAGTGAGAGGAGCCACACGCCGGATCTCTGTGCCGCTCAAAGGACACAGGAAGAGAACAGCCCCACCCCTACCCTGCCACCCACAGCCAGCACATCCAGCCATGTCCCCAGAGCTCTATCCCAGGCAGCAGGCCCCGGCCTAGAAGGATGTCCGAGGTTGGGGGAGGTCACGGTCAAAGGACCCTCATAAGGGAGCATGGAGTCAGACCCTGAAGAGACTCCCACCCCTCTGGCTGGCAG
Seq C2 exon
GAAAGAATGACATCTTTGGGGAACCCGTCAGCCTCCATGCCCAGCCAGGCAAGTCCAGTGCAGACGTGCGGGCTCTGACCTACTGCGACCTGCACAAGATCCAGCGGGCAGATCTGCTGGAGGTGCTGGACATGTACCCGGCCTTTGCGGAGAGCTTCTGGAGTAAGCTGGAGGTCACCTTCAACCTGCGGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173826:ENST00000314672:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=PU(45.5=47.1)
A:
NA
C2:
PF0002724=cNMP_binding=PD(53.4=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development