HsaINT0084445 @ hg19
Intron Retention
Gene
ENSG00000151704 | KCNJ1
Description
potassium inwardly-rectifying channel, subfamily J, member 1 [Source:HGNC Symbol;Acc:6255]
Coordinates
chr11:128707915-128712363:-
Coord C1 exon
chr11:128712277-128712363
Coord A exon
chr11:128710160-128712276
Coord C2 exon
chr11:128707915-128710159
Length
2117 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TTTCTTTGATGTGTTTTCAGATC
3' ss Score
9.97
Exon sequences
Seq C1 exon
GTCTGCATAGAAAGACCAACAACCAGCACCACTTCCTTGCTTTTTCCAGCCATGAATGCTTCCAGTCGGAATGTGTTTGACACGTTG
Seq A exon
GTAAGTGGAGGCTGGGGAAATCACCTCTCTGGAAAGCCAGGCAGATAATGTTTCATCATTAATGCAGTCATGGAAACTCAACGTTATTCAAGTGATCAATCAGGGGGTACTTCTTCACTCTACAGAAATCTTCTTTACCTTTAAAAGTAAAATGAAATTAAGGGAGGCTAGAGGAGCAGGGTGCTGGGAAAAAAACTCAGAAGTTGGTGTGTTAGGAGCCATCTCTGGAATTATAATGTATGACAAAGAGAATGTGGATTCAATTGATAAATGTTGGTTTTAGAATTTACTATTTGAGCTGAGAGTCACTCTCTGGAGAGCTGGGTAAACAGTGTGACCCTGAATGCACCTGGGAGAGAGGTCAGTCCACATGGGTGTAGACCAGGGTAAAGGATGTGTGTACAAGGAAAGGAGAAGACCATTTCCTTCTCTGTACCTCACATGCACCATCCCCTAATCCTCACTGGGGACTTGAGGTCAGTGAGGGCAGTGTGGGATGAGAGGAGGGCCCTCTTGACTATGTGCATTGCTGTTTATTCTCTTGGCAGCATTTTCTTTTTTTATGTCTTTAGAACCTGCCCTCAACATTTCAAATCACCACAGCTGTGGTTTTCTCATCACCGCTTCGACTTGGCGTTGGCTTCTTGTGTTTTCAGCTGGGTTAAGGCCTTGAACAAGACACTGTGGGATATCACTATTATTTAAAATGTATCACTCAGTTGGTTTCGCTTCCTAGTTCTTACGAATAAACACATTTTTCAAGGGGGATTTTGAAATCTATTTTAAAAACATATTTGCATTTAATGAAAAATACCCTGAAGACATTGCGGACCAGGGTGGGCACACCTTGATATTCTTGGGCATGGGGGAGGAGGTAATCTAGCGTTTATGACTTTGGGTTTCACCACTGTCAGGTGTTTATGGGACAGGCCCTTCACCATTTTGCTGTACAATGGAAGTCACAGTAATGTCATCTATAAAAAATCAATTGAGCAAATAGGATTTTGAAAAATGTAATTCATTCACTGAATTATTTCATTTACGTTTACTGAATAAACAGTAGGCACTCATCAACTGTGCTAGCAATTGTGATATAGGAATGAATAAAGTATGGTCTGTCTTTATGGAGTATTACTTAAATCAGTGCTCCCCAGTCCTCCAGCTTTGGAGTAGGGAAGGAAGTGTTAGATGTGTTGATGGTGGCTCTCATACTATTCCTTTTGGGAATCTTGGGAAACCGTGGGGAGAGAGTAGGAACAGGCTTGTAGATTTATGGAGAAGCCCTATGAGACCATCTGGTTGGATCTGAGCTCTGTTCTAAATAGTGTTCAGCATTTAACAAAAAGAAATATGACCAATACTTGTCTGAAAATATTTTAGGGAAGTGTGACTTTAGAATATAACATTTGATAACTGAGACACGGAGTGGTAGAAGCTCCCCTAGACTAGAGGCAGGGAGCCCTATATTCTAGTTGTCATCCTGCCACTGGCTAGGTACATGCATTTGGACAAGTTATTTAAATTTTCTAAATCTCAGTTTTCTCATTTGATAAATGAGAGAACAGAATTGAATTAGGATTTTTCTTGATATATGAGTATCAATAGAAGTACATAGATGATTTAGGTAGTATATTGATGAGTGTTTTATTGGTCAGTTATTCATTTTTCTATATCTCAAAAACATACATAATGCTTCAAGTTTGTGATTTCTCAGAAATTATTGCTTAACATAAGGCTAAACTTATGAGAAGGTGATTTAAGTAATATTCAATAAATAAAAATACAGGTCATAATTGGTTATTACAAACATATTTAAGGTTGTGTGAGACTAATTGAGGTCAGGAAACACTTGAATATATAATCACTTAGTTTGTCTTCATTTCTAGCTCTCTGTAATTATTTTGCCTCTTTATGTTTGAGTAACATGGTCTTCCAGTGGAAAGTTTCTATCAGAAATAGCATTGTGGTATCCAGAATAAACTTGTCAGCTTGCCAAATGATTAGTAACCCAGATAATTTTGAATGATCTTTTCGTAGTTAGGTCTTTCATGTGGGTCACCTAGTTCACTATTGCTATAAACATAATCCTTTTTTGTTTTTCTTTGATGTGTTTTCAG
Seq C2 exon
ATCAGGGTGTTGACAGAAAGTATGTTCAAACATCTTCGGAAATGGGTCGTCACTCGCTTTTTTGGGCATTCTCGGCAAAGAGCAAGGCTAGTCTCCAAAGATGGAAGGTGCAACATAGAATTTGGCAATGTGGAGGCACAGTCAAGGTTTATATTCTTTGTGGACATCTGGACAACGGTACTTGACCTCAAGTGGAGATACAAAATGACCATTTTCATCACAGCCTTCTTGGGGAGTTGGTTTTTCTTTGGTCTCCTGTGGTATGCAGTAGCGTACATTCACAAAGACCTCCCGGAATTCCATCCTTCTGCCAATCACACTCCCTGTGTGGAGAATATTAATGGCTTGACCTCAGCTTTTCTGTTTTCTCTGGAGACTCAAGTGACCATTGGATATGGATTCAGGTGTGTGACAGAACAGTGTGCCACTGCCATTTTTCTGCTTATCTTTCAGTCTATACTTGGAGTTATAATCAATTCTTTCATGTGTGGGGCCATCTTAGCCAAGATCTCCAGGCCCAAAAAACGTGCCAAGACCATTACGTTCAGCAAGAACGCAGTGATCAGCAAACGGGGAGGGAAGCTTTGCCTCCTAATCCGAGTGGCTAATCTCAGGAAGAGCCTTCTTATTGGCAGTCACATTTATGGAAAGCTTCTGAAGACCACAGTCACTCCTGAAGGAGAGACCATTATTTTGGACCAGATCAATATCAACTTTGTAGTTGACGCTGGGAATGAAAATTTATTCTTCATCTCCCCATTGACAATTTACCATGTCATTGATCACAACAGCCCTTTCTTCCACATGGCAGCGGAGACCCTTCTCCAGCAGGACTTTGAATTAGTGGTGTTTTTAGATGGCACAGTGGAGTCCACCAGTGCTACCTGCCAAGTCCGGACATCCTATGTCCCAGAGGAGGTGCTTTGGGGCTACCGTTTTGCTCCCATAGTATCCAAGACAAAGGAAGGGAAATACCGAGTGGATTTCCATAACTTTAGCAAGACAGTGGAAGTGGAGACCCCTCACTGTGCCATGTGCCTTTATAATGAGAAAGATGTTAGAGCCAGGATGAAGAGAGGCTATGACAACCCCAACTTCATCTTGTCAGAAGTCAATGAAACAGATGACACCAAAATGTAACAGTGGCTTTTCAACGGGAGTAAAGCAAAGTCTCTAAAGCTCCTAGTACCTAGAAGCATTATGAAGCAGTCAACAATTTAGGGGTACGAAAGTAGGATGAGAGCCTTCAAAGTCTACCAGCACAAAGACCCCTGAGCCCCGCAATTGTGATCCCACAAGACATGCATCTCCACAAGGCTACTGTATTAGAACGTGCAATGCATTTATATGAAACTGGTGTATGGAAGACATAGGTGCTCTCTTGAAATCTTAAATATGATTATTTGAGCTCATATAAGGTGGATTGGAGCAGATAAAATTATCAAAAGTTTCATGAACAGGCCAAACAAAATATTTTTTAAAGTTTCCTTAAAGAAGTTATGAACTTTAGAAAGGATCAGGGGACAATAATAATCTCATTTTGATTCTACTGATAAGAATGACTCCACTTTTAATGTGGACTTTTACTCATGGAAAAATTGTCTCCTAATTTGGGGAGATGAACCAACCAATCAATGACAAGAAAACGCTTACACAAAGAACAATTTGAGGCTCTAAGCTTCTCATGTGGTACGTTTAGACAGAGGCTAAATCTGCACACTAGAATCTTGATGATACCTTCCTGCAAGACAGAATGCTTTAGTTAAAAGTGGTGATGATATTTCTTTCAATCTGTATTGGATGGCTTAAAGGGCTATAAATCTGTTTATAAAGAGCATTTCCTGCTCTTCGAAGACAGCAATGAGGAGTTGGAAGGTGCAAAGTCAGTAGAGAAGGGAATGTATCATTAATGCACCTGAGAAGAAACAGTTTCATGTGTTCCTCCACCTAGAGTTTGTACTGGAATGCTATTTCTAAAGAAGAAGTGGGAAAGAGAGAGGAATGGGATGGAGCCCCACAGTCAGAATGTTACTATGTCTTTCTTTCCCTGACAGCCCATCTTCCTAAAAGGGACCAGCTTATGGAAGGCTCGACCTTGAGGGGAAAGTTTTACTGTGAAAGTCTTCTTCAGATCCCCACCTGCATCATTCCGAATGTGTCCTGGAAAAAAACTGGTACTCAAAGCTGCTTAGGAATCAAAATGTTTTCAGTGTGTTGATTAATATAGTAAATTTCTGAAACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151704-KCNJ1:NM_000220:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0100715=IRK=WD(100=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)